Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4578 149 8e-31 seq35959 98.7 1e-15 seq6054 86.0 8e-12 >seq4578 Length=10518 Score = 149 bits (164), Expect = 8e-31 Identities = 355/533 (67%), Gaps = 19/533 (4%) Strand=Plus/Plus Query 116062 TCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATAT 116121 |||||||| || |||| |||||||| | | | |||| |||| | | ||||| || Sbjct 3750 TCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTGCGTACGTCTCGTAG 3809 Query 116122 GGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCA 116181 || || ||| ||||||||| | || ||||| | ||| | | || || ||||| Sbjct 3810 GGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAGTAGATGGTCTCG 3869 Query 116182 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA 116241 || || | ||| | | ||||||||| ||| |||| | | ||||| |||||| Sbjct 3870 AAGATTTGCTGATTGAGTTTCTTGGCCTCTTCGCTATCATAGGGCAGACGCATCAAAATG 3929 Query 116242 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC--T 116299 || ||||||| ||||| || || || | |||||||| | ||||||||||| ||| | Sbjct 3930 AAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTCATATTGGACAAT 3989 Query 116300 TTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 || || ||| ||||||||| | || | ||||| || | || | ||| | Sbjct 3990 TT-----GGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCG 4044 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---T 116413 | |||| ||| || | | | | || |||| ||||| | |||| ||| | Sbjct 4045 TAACAATCTTCGTTACTGCTTTGAG--TTTC----TCAAAGTCGTACGTCTTATCAGCCT 4098 Query 116414 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 116473 | || || || || || || || |||||||| ||||||| |||||||||| | Sbjct 4099 TTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACG 4158 Query 116474 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 || |||| |||||| || |||||||| || ||| || || | |||| |||| Sbjct 4159 AATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTGAT 4218 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 | ||| |||| |||||||| ||||| | ||| || |||||||| || ||| Sbjct 4219 TACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCC 4271 >seq35959 Length=4883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGAGACGCA---TCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 ||||||||||| | | |||| ||| || |||||||| |||| | ||| || ||| Sbjct 1658 GTGAAGATGTAACGGG---GAGATGCACTATCCTTGCCACCATTGAGTCTCGTGCCGAAT 1714 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 |||||| ||||| ||||||||||||||| || ||| | ||| | | |||| ||| Sbjct 1715 TGACCATTTGGCTGAAGGAGATTGATATTATTGCTGCCAACATAATTCTGAGCCAGATTG 1774 Query 176018 ACAATCGTATCCGCGAGGGAGACT----TCACCGTGATGGTAGGCCGACTTGTCCGCCAC 176073 ||||| || || | |||||| ||||| || || ||||| ||||| || ||||| Sbjct 1775 ACAATGGT---CG-AACAGAGACTCTGCTCACCATGGTGATAGGCTGACTTCTCAGCCAC 1830 Query 176074 ATACGCCGCCAACTGCGCCACCTTCATCTCATCCTTG 176110 | | ||||| || || ||||| | ||| | |||| Sbjct 1831 TGAACCAGCCAATTGTGCAACCTTAACCTCTTTCTTG 1867 >seq6054 Length=5425 Score = 86.0 bits (94), Expect = 8e-12 Identities = 244/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || |||||||| | || ||||| | || |||||||||| || || || || || Sbjct 3996 TCGAAACGACCTGGCCTCAGTAGGGCCTTATCTAGGATATCAACACGATTTGTAGCTGCC 3937 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGA-GTTGATTGAT 12823 | ||| || | || | ||| ||| |||||||| || ||||| | ||||| | Sbjct 3936 AAGACTACAACATTTGTGGTGGTATTGAATCCATCCATTTCTA-CAAGAAGCTGATTCAG 3878 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCAC---CCGCACTGCGTTGCTTACCGAC 12880 || | || | ||| || | | || | | | |||| | | || | | || || Sbjct 3877 AGTATTCTCTTGCTCAGAATGCCCTC-CAAAACTCTTTCCGCCC--CTTTTCCTGCCCAC 3821 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 12940 || ||||||||||||||||| | ||||| || || || | ||| | | || || Sbjct 3820 TGCATCAATTTCGTCAATGAACAGAATACATGGAGCATGTTTTCTGGCCATGGCGAACAT 3761 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 13000 ||||| |||||| | || |||||||||||||| || | ||| | | | | | ||| Sbjct 3760 ATCTCTCACTCTTGATGGTCCAACACCCACAAACATTTCGAGAAATTCTGAGCCAG-ACA 3702 Query 13001 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 || ||| ||||| ||||| | ||||| || | ||| || ||||| || || |||| Sbjct 3701 CTGTGATAAAGGGTACGTTCGCCTCACCGGCTGTTGCTTTTGCCAGGAGTGTTTTTCCCG 3642 Query 13060 TCCCTGG 13066 | ||||| Sbjct 3641 TTCCTGG 3635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612687968498160