Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq26202 165 1e-35 seq2745 159 5e-34 >seq26202 Length=13276 Score = 165 bits (182), Expect = 1e-35 Identities = 325/472 (69%), Gaps = 8/472 (2%) Strand=Plus/Minus Query 159910 CTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTT 159969 ||| |||| | || |||||||| ||||||| || || || |||||||| | |||||| Sbjct 1470 CTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTT 1411 Query 159970 GGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC 160029 || | |||| || |||||||| ||||| | ||||||||| || || | || || Sbjct 1410 CGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCT 1351 Query 160030 ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC 160089 |||||||| || || ||||| || || ||||| || | | | || ||||| || Sbjct 1350 TCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGC 1291 Query 160090 GTTGGTGTCATGGG--TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATG 160147 || || | ||| ||||| ||||| || |||||||| || || |||| | Sbjct 1290 -TTCCTGAC-TGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCA-G 1234 Query 160148 CG-CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAAT 160206 || ||| | ||| || || | || | ||||| | |||| ||| || |||| Sbjct 1233 CGTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCAAT 1174 Query 160207 CAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATA 160266 ||| |||||| || ||||||||| || ||||| ||||||||| ||||| | Sbjct 1173 TAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAA 1114 Query 160267 TGTCGCCTCCAGATACT-GCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCA 160325 | | ||||| | || | |||||||||| |||| | | ||||||| |||| || | Sbjct 1113 TCTAGCCTCT-GTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAA 1055 Query 160326 ACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC 160377 ||| |||| || |||||||||||||||||||| || ||||| | ||||| Sbjct 1054 TCCCATCGGAAGCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTC 1003 >seq2745 Length=20976 Score = 159 bits (176), Expect = 5e-34 Identities = 324/472 (69%), Gaps = 8/472 (2%) Strand=Plus/Minus Query 159910 CTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTT 159969 ||| |||| | || |||||||| ||||||| ||| || || |||||||| | |||||| Sbjct 4194 CTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCGTT 4135 Query 159970 GGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC 160029 || | |||| || |||||||| ||||| | ||||||||| || || | || || Sbjct 4134 TGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCT 4075 Query 160030 ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC 160089 ||||| || || || ||||| || || ||||| || | | | || ||||| || Sbjct 4074 TCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGC 4015 Query 160090 GTTGGTGTCATGGG--TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATG 160147 || || | ||| ||||| ||||| || |||||||| || || |||| | Sbjct 4014 -TTCCTGAC-TGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCA-G 3958 Query 160148 CG-CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAAT 160206 || ||| | ||| || |||| || | ||| | |||| ||| || |||| Sbjct 3957 CGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAAT 3898 Query 160207 CAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATA 160266 |||| |||||| || ||||||||| || ||||| ||||||||| ||||| | Sbjct 3897 CAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAA 3838 Query 160267 TGTCGCCTCCAGATACT-GCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCA 160325 | | ||||| | || | |||||||||| |||| | | ||||||| |||| || | Sbjct 3837 TCTAGCCTCG-GTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAA 3779 Query 160326 ACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC 160377 ||| |||| || || ||||||||||||||||| || ||||| | ||||| Sbjct 3778 TCCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTC 3727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794093409382560