Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq83690 138 3e-27 seq18 134 3e-26 seq186 118 2e-21 seq165 95.1 3e-14 >seq83690 Length=433 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| |||||||| || |||||||| | ||||||||| | | ||| | |||||| Sbjct 237 AGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCT 178 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||| |||||||| |||||||||||||| ||| |||||||| ||| Sbjct 177 TCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 118 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | || || | | ||| || || | ||||| ||| Sbjct 117 TGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTC 58 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 57 TTGCCAGTGAGGGTCTTGACAAAGATCTG 29 >seq18 Length=974545 Score = 134 bits (148), Expect = 3e-26 Identities = 149/198 (75%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| |||| ||||| || | || || | ||||| || |||||||||||||| || Sbjct 449638 CTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAA 449579 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | ||||||||| |||||| |||||| || |||||||||||| ||||| Sbjct 449578 GATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 449519 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||| | ||| |||| | ||| || ||||| ||||| || || ||||| ||||| ||||| Sbjct 449518 TTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCAC 449459 Query 199618 AAAAATTTGGTACATTTT 199635 ||| || || |||||| Sbjct 449458 AAAGATCTG---CATTTT 449444 >seq186 Length=148488 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| |||| ||||||||| | ||| || | ||||| || |||||| Sbjct 13374 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCGAGCTGC 13315 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| |||||||| |||||||| || || || || || || ||||| Sbjct 13314 TTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGGATCTTA 13255 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | |||||| | || ||| || || | ||||| ||||| || || Sbjct 13254 GCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTTCCGGTA 13195 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||| ||||||||||| Sbjct 13194 AGGGTTTTGACAAAAATTTG 13175 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| ||||| || || || || ||||| |||| ||||||||| | | || Sbjct 14074 CGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTA 14015 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || || || || || | ||| |||||||| ||| ||||||| Sbjct 14014 CGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCT 13955 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || || ||| | || || | || ||| || |||| Sbjct 13954 TCTTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGA 13895 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || |||||||| || |||||||| Sbjct 13894 GTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTG 13857 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || |||||| ||||| || |||||||| || | ||||||||||| | || Sbjct 13164 CGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTA 13105 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || || || || |||||||||||||| || ||| || Sbjct 13104 CGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCC 13045 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| || | || || | | || || || | Sbjct 13044 TCCTTATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGA 12985 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | ||| |||||||| || || Sbjct 12984 GTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTG 12947 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || || |||||||| |||| ||||||||||| | ||| | ||||||||| Sbjct 13834 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCC 13775 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||| || ||||| ||||| | ||||||||| || || |||||||| ||||| Sbjct 13774 AACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGG 13715 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||| ||| || | ||||| | | || || || | || || ||||| Sbjct 13714 ATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTT 13655 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || Sbjct 13654 CCAGTGAGGGTCTTGACAAAGATCTG 13629 Score = 113 bits (124), Expect = 1e-19 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || |||||||| |||| |||||||||| || || | |||||| Sbjct 13609 AGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGACCATCT 13550 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||| ||||| | |||||| |||||||| || || || ||| Sbjct 13549 TCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTATCC 13490 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || |||||| | ||| | || || | | ||| || || | || || ||| Sbjct 13489 TGAAT-TTGGCCTTCAC-GTTTCAATAGTATCAGAAGGTTCGACCTCAAGGGTAATGGTC 13432 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || || Sbjct 13431 TTTCCGGTAAGGGTCTTGACAAAGATCTG 13403 >seq165 Length=164173 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || ||||| || |||||| || | |||||||| | | || ||||| | Sbjct 30363 ACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGGCCATCCTTA 30422 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||||||||| ||||| ||| |||| || || ||| ||||||| || |||||| Sbjct 30423 AGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCCTTGTCCTGA 30482 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| |||| ||| | ||| || | |||||| ||||| ||||| || || Sbjct 30483 ATCTTTGCAATCACATTTTCAATGGTTATTGAGGGTTCTACTTCCAATGTGATGGTTTTC 30542 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||| |||||||| || || Sbjct 30543 TCCGT--AAGTCTTCACAAAGATCTG 30566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177308000427342