Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18 136 4e-27 seq186 122 1e-22 seq83690 102 9e-17 seq28036 86.0 7e-12 >seq18 Length=974545 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||||||| ||||||| || |||||||| ||||||||||| || | Sbjct 449675 TGCCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCG 449616 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || || |||||||| ||||| || ||||| |||||||| || | | Sbjct 449615 ACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAG 449556 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| ||||| || | | | | || || | ||||| Sbjct 449555 GAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCA 449496 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| ||||||||||| ||||| || || || |||||||| ||||||||| Sbjct 449495 CCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTTG 449443 >seq186 Length=148488 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| || |||| ||| | ||| |||||| ||||| |||||||||| Sbjct 13400 TGCCTCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 13341 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| | || |||||||||||||| ||||| || | || |||||||| | | Sbjct 13340 ACAAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGG 13281 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||| || |||||| ||||| || | | ||||| | ||| | Sbjct 13280 GGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAA 13221 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || | |||||||| || || || || ||||| ||||| ||||||||| Sbjct 13220 CTTCAAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCATT 13171 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| || ||||| | ||| |||||| || || |||||||| || || || || | Sbjct 13159 ACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACC 13100 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || |||||||| || || |||| ||||||||||| | || | || |||||| Sbjct 13099 ATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTT 13040 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||| | || | | ||| || | || || || | ||||| Sbjct 13039 ATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGAT 12980 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || |||| || || |||||||| |||||| Sbjct 12979 GGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATT 12943 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| |||||||||||||| || || || || | || || Sbjct 13606 ACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGACCATCTTCA 13547 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| ||||| || ||||| ||||| ||||| | || | | |||||| ||| || Sbjct 13546 AGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTATCC-TG 13488 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 | || ||| | ||| | | || || | ||| || || | || ||||| || Sbjct 13487 AATTTGGCCTTCA-CGTTTCAATAGTATCAGAAGGTTCGACCTCAAGGGTAATGGTCTTT 13429 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || |||||||| ||||| Sbjct 13428 CCGGTAAGGGTCTTGACAAAGATCTGCAT 13400 >seq83690 Length=433 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || |||||||| || ||||| || | || || | ||||| || ||||| Sbjct 216 TCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAG 157 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | | ||||||||| |||||| ||||| || Sbjct 156 ATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 97 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| | ||| || || | |||||||| ||||| || || || || ||| Sbjct 96 TCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 37 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 36 AAGATCTGCAT 26 >seq28036 Length=10335 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||||| || |||||||| |||||||||||||| || || || || | || || Sbjct 7700 CACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAGTCCGAGAGTGTACGGCCATCCTC 7759 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | |||||| |||| || |||| |||||||| || | || || | ||| |||||| Sbjct 7760 AACCTGCTTTCCGGAAAAGATCAGACGCTGCTGATCCGGAGGAACACCCTCATTGTCCTA 7819 Query 46504 GATCTTC 46510 |||||| Sbjct 7820 AATCTTC 7826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564483623033520