Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2745 306 4e-78 seq26202 304 1e-77 seq186 113 5e-20 seq18 96.9 3e-15 seq83690 91.5 1e-13 >seq2745 Length=20976 Score = 306 bits (338), Expect = 4e-78 Identities = 562/817 (69%), Gaps = 10/817 (1%) Strand=Plus/Minus Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 || || || || || | ||||| || || || ||||| || |||||| | |||||| Sbjct 4364 AGTTCCACAAGTAGACGATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTC 4305 Query 132772 AGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCG 132831 | ||||||| | ||| || || || || ||||| || || || || | || || Sbjct 4304 ATGCCCAGCATATCCACTGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCT 4245 Query 132832 TCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATC 132891 || || |||||| | | |||| || | ||| ||||||| ||||||||||||| Sbjct 4244 TCACGGATGATTTCGATGATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATC 4185 Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 || || |||||||| || ||||| || || || | || || || ||||| ||| || Sbjct 4184 AAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCGTTTGAGAATGTG 4125 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 | |||||||||| ||| ||| ||||||||| || || | ||||| || || ||| Sbjct 4124 AGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTGAAG 4065 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 || | |||||| || || || || || | || || || || || | ||||| | ||| Sbjct 4064 AAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTG 4005 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 || ||||| |||| ||||| || ||||| | ||||| || |||| ||| || ||||| Sbjct 4004 GCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCA 3945 Query 133132 TTCAACA--AACGGAGTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGA 133187 || |||| ||| |||||||| ||||| || | ||| ||||| || || Sbjct 3944 TTGAACAGGAAC--TCTTTCTCTT--GAGGATCCCGGATGTACGTGTCAATCAGCAGACT 3889 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 ||||| || ||| || ||||||||||| || |||||||| || ||| | | ||||| Sbjct 3888 GTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTC 3829 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | | ||||| || ||| ||| ||||| |||||||| || ||||| || || ||| Sbjct 3828 GGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGA 3769 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC-T 133366 |||||||| || |||| |||||| ||||| | | ||| || ||| || || | Sbjct 3768 AGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTC-AGTGCAT 3710 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 ||||| | || ||| || ||||||||||| || ||||| || ||||| || | Sbjct 3709 TCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGACGCTTCAG 3650 Query 133427 CTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGG 133486 ||| ||||||||| ||| ||||| || || || ||||| | ||| || | | || Sbjct 3649 CTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAATCTCCTGG 3590 Query 133487 GGTTTTCGCGCAACAGCGGCTCCGCTTGGGGGTCGAA 133523 | || || | | || |||||| || ||||| || Sbjct 3589 GATTCTCCCTGAGCAAGGGCTCCAATTCTGGGTCAAA 3553 >seq26202 Length=13276 Score = 304 bits (336), Expect = 1e-77 Identities = 559/815 (69%), Gaps = 6/815 (1%) Strand=Plus/Minus Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 || || || || |||| ||||| || || || ||||| || |||||| | |||||| Sbjct 1640 AGTTCCACAAGTAGCCGATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTC 1581 Query 132772 AGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCG 132831 | ||||||| | ||| || || || || ||||| || || || || | || || Sbjct 1580 ATGCCCAGCATATCCACTGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCT 1521 Query 132832 TCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATC 132891 ||| || |||||| | | |||| || | ||| ||||||| ||||||||||||| Sbjct 1520 TCGCGGATGATTTCGATGATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATC 1461 Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 || || |||||||| || ||||| || || || | || || || ||||| ||| || Sbjct 1460 AAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTG 1401 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 | |||||||||| ||| ||| ||||||||| || || | ||||| || || |||| Sbjct 1400 AGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAG 1341 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 || | |||||| || || || || || | || || || || || | ||||| | ||| Sbjct 1340 AAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTG 1281 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 || ||||| |||| ||||| || ||||| | ||||| || |||| ||| || ||||| Sbjct 1280 GCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCA 1221 Query 133132 TTCAACA--AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 || || | ||| |||||| | || || | ||| ||||| || || | Sbjct 1220 TTGAAGAGGAAC--TCTTTCTCCTGCGGATCCCGGATGTACGTGTCAATTAGCAGACTGT 1163 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 |||| || ||| || ||||||||||| || |||||||| || ||| | | ||||| Sbjct 1162 ACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCTG 1103 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | ||||| || ||| ||| ||||| |||||||| || ||||| || || ||| | Sbjct 1102 TTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAG 1043 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC-TCC 133368 |||| || || |||| |||||| ||||| | | ||| || ||| || || | | Sbjct 1042 CGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTC-AGTGCATTC 984 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 |||| | ||| |||||| ||||| ||||| || ||||| || ||||| || ||| Sbjct 983 CAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGACGCTTCAGCT 924 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGG 133488 | ||||||||| ||| ||||| || || || ||||| | ||| || | | ||| Sbjct 923 TGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAATCTCCTGGGA 864 Query 133489 TTTTCGCGCAACAGCGGCTCCGCTTGGGGGTCGAA 133523 || || | | || |||||| || ||||| || Sbjct 863 TTCTCCCTGAGCAAGGGCTCCAATTCTGGGTCAAA 829 >seq186 Length=148488 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || || || || ||||||||| | || || || | | Sbjct 13171 AATGCAAATTTTTGTCAAAACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAACCATC 13230 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| || || ||||| || ||| | ||||| Sbjct 13231 TGACACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCA 13290 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| ||||| ||||| || || | |||||| | ||||||||| Sbjct 13291 GCAACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGTCCGACTACAA 13350 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||| ||||| | || || |||||||| Sbjct 13351 CATCCAGAAGGAGTCTACCCTTCATTTGGT 13380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || || || | || || || | | Sbjct 13854 ATGCAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCT 13913 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| || || | || ||||| |||||||| | ||||| Sbjct 13914 GATACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 13973 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || || ||||| || || || | || ||||| ||||||||| Sbjct 13974 CAACGTTTGATTTTTGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCGGACTACAAC 14033 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||| | ||||||||| Sbjct 14034 ATCCAGAAGGAATCAACCCTTCATCTTGTGCTGCGT 14069 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||| || |||| || ||| || | Sbjct 13626 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCT 13685 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| || ||||| || | || || Sbjct 13686 GACACTATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 13744 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || |||||| |||| || | || || ||| |||||||| Sbjct 13745 GCAGCGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAA 13804 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || | ||| | ||| | ||||| ||| Sbjct 13805 CATCCAGAAGGAGTCAACCCTTCACCTTGTGTTACGTCTCAGAGGTGGC 13853 >seq18 Length=974545 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || ||||| |||||||||||| | || || || || Sbjct 449444 AAAATGCAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAACCC 449503 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | |||| ||| || | ||||| ||||||||||| | || Sbjct 449504 TCAGATACCATTGAAAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGAT 449563 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | || || || ||||| || || | || || || || ||| Sbjct 449564 CAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGGATTAC 449623 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||||| ||| || |||||| | ||| ||||| Sbjct 449624 AATATCCAGAAGGAGAGC-ACCCTGCATCTCGTGTTGCGT 449662 >seq83690 Length=433 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || ||||| | || Sbjct 26 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCC 85 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 86 GATACTATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 144 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || || |||| || | || || || |||||||| Sbjct 145 GCAGCGTCTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACTCTTTCGGACTACAA 204 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||||||| | || || ||| | || || ||| Sbjct 205 CATTCAAAAGGAATCCACTCTCCATCTTGTCCTCCGT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499504906755840