Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4578 123 3e-23 >seq4578 Length=10518 Score = 123 bits (136), Expect = 3e-23 Identities = 448/695 (64%), Gaps = 27/695 (4%) Strand=Plus/Minus Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || ||||| || || || ||| | |||||||| || || ||| ||||||||||| || Sbjct 4270 GAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGCAACAGGAAGAGTAATCAGCAG 4211 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || || || ||| | || |||||||| | |||| | | ||| Sbjct 4210 AATATTGGGACAATTCGCTGTAGCAATTTGTGCACAGAAATTGTAGAATATTCGTCCAAG 4151 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 ||||||| |||||||| || || ||||| || |||||| | || || | | || Sbjct 4150 GATGAGATTGCTGTGTGCAATCTGGCATCTATTGCTCTCAATATGTTCGTAAAGGCTGAT 4091 Query 112485 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544 | |||| | || | ||| |||||| | | ||| ||||| | ||| || || | Sbjct 4090 A---AGACGTACGACTTTGAGAAACTCAAAGCAGTAACGAAGATTGTTACGCGCAATTTG 4034 Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAAT---CTAATATG 112601 |||| ||| || || | || | || ||||| | | | |||| | |||||| Sbjct 4033 AACAAAGTCATCGACATCAACTACTATCCCGT---GCCAGAGGCCAAATTGTCCAATATG 3977 Query 112602 AGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGC 112661 |||||| | |||||||| | || || || ||||| ||||||| |||||| | || Sbjct 3976 AGACACAGGCCAATTGGGATTGGGGTTCAGGGTCTAGCGGATGCTTTCATTTTGATGCGT 3917 Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721 | | | |||| ||| || || ||| || ||||| || || || ||||| || || Sbjct 3916 CTGCCCTATGATAGCGAAGAGGCCAAGAAACTCAATCAGCAAATCTTCGAGACCATCTAC 3857 Query 112722 CACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781 | | || | ||||| |||| || ||||| ||| ||| || || || || | Sbjct 3856 TATGGTGCCTTGGAGGCCAGTTGCGAATTGGCTGAGAAGCTTGGACCCTACGAGACGTAC 3797 Query 112782 GAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 112840 | || | ||||| | |||||| | ||||| | || ||||||| | || ||||| Sbjct 3796 GCAGGATGTCCAG-TGAGCAAGGGTATCCTTCAGTACGAGATGTGGG-ACAAGAAACCAA 3739 Query 112841 -GCTTCACTACGACTGGGACGCTCTCAAGGAA-------CGCATCAAGGAGAAGGGTCTT 112892 | | | | ||||| | || |||| | | || || || | || || Sbjct 3738 CGGATTTGTGGAATTGGGATGAGCTAAAGGCAAAAATTGCCCAACATGGTGTGAGGAATT 3679 Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 ||| | || | || |||||||||||||| || || || || || | || ||| Sbjct 3678 CGT-------TGCTGGTTGCCCCAATGCCAACAGCTTCAACGGCCCAGATTCTAGGCAAT 3626 Query 112953 AATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 ||||||| ||| ||||||||||| | ||||| || Sbjct 3625 AATGAATCCTTCGAACCCTACACATCCAACATGTA 3591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619913507154720