Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4578 210 3e-49 >seq4578 Length=10518 Score = 210 bits (232), Expect = 3e-49 Identities = 472/693 (68%), Gaps = 21/693 (3%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | ||||||||||| ||| |||||||||| || | || || || || || Sbjct 3591 TACATGTTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGAA 3650 Query 105995 GCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 |||||||||||||| || | || || || | | | | ||| | || || | Sbjct 3651 GCTGTTGGCATTGGGGCAACCAGCAACGAAT--TCCTCACACCATGTTGGGCAATTTTTG 3708 Query 106053 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110 |||| || ||||||| | | | | | |||||||| | ||||||| || | || Sbjct 3709 CCTTTAGCTCATCCCAATTCCACAAATCCG-TTGGTTTCTTGT-CCCACATCTCGTACTG 3766 Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 ||| | || | | | ||| | || | | ||||| |||| || | ||||| Sbjct 3767 AAGGATACCCTTGCTCACTGGACATCCTGCGTACGTCTCGTAGGGTCCAAGCTTCTCAGC 3826 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 |||||| || || ||||||| || | | || ||||| || ||||| | ||| | Sbjct 3827 CAATTCGCAACTGGCCTCCAAGGCACCATAGTAGATGGTCTCGAAGATTTGCTGATTGAG 3886 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGAC 106289 | |||||| || || |||| | | | || ||| |||||| || ||||||| |||| Sbjct 3887 TTTCTTGGCCTCTTCGCTATCATAGG-GCAGACGCATCAAAATGAAAGCATCCGCTAGAC 3945 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCGCAGTCTCAAC 106347 | ||||| || | ||||| || ||||||| |||||| ||| ||| || | | || | Sbjct 3946 CCTGAACCCCAATCCCAATTGGCCTGTGTCTCATATTGGACAATTTGGC-CTCTGGCA-C 4003 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 |||||| | || |||| |||||| ||| | ||| ||||||||||| || | | | Sbjct 4004 GGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCGTAACAATCTTCGTTACTGC 4063 Query 106408 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGAAGGGCG 106465 | ||||| ||| | || | || | || ||| | ||||| ||| || || Sbjct 4064 TTTGAGTTTCTCAAAGTCGTACGTCTTA-TCAGCCTTTACGAACATA--TTG--AGAGCA 4118 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || ||||||| |||||| ||||| |||||||||| | || |||| ||||||||| Sbjct 4119 ATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACGAATATTCTACAATTTCTGTG 4178 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 ||||| ||| || ||| ||||| | ||||| || |||||||| ||||||||||| Sbjct 4179 CACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTGATTACTCTTCCTGTTGCACGCA 4238 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618 || ||||| | |||||| |||||||| || ||| Sbjct 4239 TCTTTGTACAACATGTACGGCGTCCCAGTTTCC 4271 Score = 199 bits (220), Expect = 5e-46 Identities = 470/694 (68%), Gaps = 23/694 (3%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | ||||||||||| ||| |||||||||| || | || || || || || Sbjct 6918 TACATGTTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGAA 6977 Query 105995 GCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 |||||||||||||| || | || || || | | | | || | || || | Sbjct 6978 GCTGTTGGCATTGGGGCAACCAGCAACGAAT--TCCTCACGCCATGTTGGGCAATTTTTG 7035 Query 106053 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110 |||| | ||||||| | | | | | |||||||| | ||||||| || | || Sbjct 7036 CCTTTAACTCATCCCAATTCCACAAATCCG-TTGGTTTCTT-TCCCCACATTTCGTACTG 7093 Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 || | || | | | ||| | || | ||||||| |||| || | ||||| Sbjct 7094 CAGGATACCCTTGCTCACTGGACATCCTGCGTATGTCTCGTAGGGTCCAAGCTTCTCAGC 7153 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 |||||| || || ||||||| || ||| || ||||| || ||||| | ||| | Sbjct 7154 CAATTCGCAACTTGCCTCCAAGGCACCGTAGTAGATGGTCTCGAAGATTTGCTGATTGAG 7213 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGAC 106289 | ||||||||| || ||| | | | || ||| |||||| || ||||||| |||| Sbjct 7214 TTTCTTGGCTTCTTCGCTGTCATAGG-GCAGACGCATCAAAATGAAAGCATCCGCCAGAC 7272 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCGCAGTCTCA-A 106346 | ||||| || | ||||| || ||||| | |||||| ||| ||| || ||| | Sbjct 7273 CCTGAACCCCAATCCCAATTGGCCTGTGCCTCATATTGGACAATTTGGCC---TCTGGTA 7329 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 ||||||| | || |||| |||||| ||| | ||| ||||||||||| || | | Sbjct 7330 CGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCGTAACAATCTTCGTCACTG 7389 Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGAAGGGC 106464 | | ||||| ||| |||| | || | || ||| | ||||| ||| || || Sbjct 7390 CTTTGAGTTTCTCAAAATCGTACGTCTTA-TCAGCCTTTACGAACATA--TTG--AGAGC 7444 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 || ||||||| |||||| ||||| |||||||||| | || |||| ||||||||| Sbjct 7445 AATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACGAATATTCTACAATTTCTGT 7504 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGC 106584 ||||| ||| || ||| ||||| | ||||| || || ||||| |||||||||| Sbjct 7505 GCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTGATTGCTCTTCCTGTTGCACGC 7564 Query 106585 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618 ||| ||||| | |||||| |||||||| || ||| Sbjct 7565 ATCTTTGTACAACATGTACGGCGTCCCAGTTTCC 7598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589192983888240