Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq83690 152 1e-31 seq186 150 4e-31 seq18 111 3e-19 seq60870 96.9 8e-15 seq7722 96.9 8e-15 seq165 84.2 5e-11 >seq83690 Length=433 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||||| || |||||||| ||||| || | |||||| | |||||||| Sbjct 234 ACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCC 175 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || |||||||| || || || ||||||||||| || ||||| ||||| || Sbjct 174 AATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGG 115 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||| || || ||| ||| || |||||||| | ||||| Sbjct 114 ATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTG 55 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 54 CCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Score = 125 bits (138), Expect = 2e-23 Identities = 137/181 (76%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 |||||||||| | |||||| | |||||||| || ||||| || || ||||| | || | Sbjct 433 TATTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCT 374 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | ||||||||||| || ||||| ||||| |||||||| |||||| ||||||||||||| Sbjct 373 GCTGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGT 314 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 | || || ||||| || |||| ||| |||| || | || || || || | |||| Sbjct 313 CAGAGGGCTCAACTTCGAGAGTAATGGTC-TTCCGGTAAGGGTCTTGACAAAGATCTGCA 255 Query 195140 T 195140 | Sbjct 254 T 254 >seq186 Length=148488 Score = 150 bits (166), Expect = 4e-31 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || ||||| || || || ||||| |||| |||| || | ||||| |||||||| Sbjct 13374 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGACCATCCTCGAGCTG 13316 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || ||||| |||||||| || || || || || ||||| || || Sbjct 13315 CTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGGATCTT 13256 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||||||||| || ||| ||||||||||| | |||||||| || Sbjct 13255 AGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTTCCGGT 13196 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | ||||||| Sbjct 13195 AAGGGTTTTGACAAAAATTTGCATT 13171 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || || || || || ||||| || | ||| || | ||||| || Sbjct 14062 ACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCA 14003 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||| |||||||||||||| |||||||| || ||| Sbjct 14002 AGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGA 13943 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || ||||| || || || ||| ||||| || |||| |||||| Sbjct 13942 ATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGTCTTT 13883 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| |||||| ||||| | |||||| Sbjct 13882 CCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||||||||| || ||||| || || || ||||| || | ||||| Sbjct 13847 TCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 13788 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||| || || || ||||| | || || || ||||| || || || Sbjct 13787 ACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCC 13728 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||||||||||||||| ||||| || || ||||| || Sbjct 13727 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAG 13668 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | || || || || | ||||| Sbjct 13667 AGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 >seq18 Length=974545 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || || || ||| ||| || || ||||||||||| | || || | Sbjct 449665 GAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACG 449606 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || |||||||| || || ||||| | || || || || |||||||| || || Sbjct 449605 GCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTC 449546 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| ||||| ||| || || || |||||||| || || |||||| || | ||| Sbjct 449545 CTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGT 449486 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || || || || | ||| || || || | ||||||| Sbjct 449485 GATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTT 449445 >seq60870 Length=785 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || || |||||||| |||||||||||||| | ||| || | |||||||| Sbjct 731 AACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCATCTTC 672 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || || || || | ||||| || ||||| || ||||| ||||| || || Sbjct 671 TAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTATCCTG 612 Query 195051 AATTTT 195056 ||| || Sbjct 611 AATCTT 606 >seq7722 Length=1803 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || || |||||||| |||||||||||||| | ||| || | |||||||| Sbjct 126 AACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCATCTTC 67 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || || || || | ||||| || ||||| || ||||| ||||| || || Sbjct 66 TAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTATCCTG 7 Query 195051 AATTTT 195056 ||| || Sbjct 6 AATCTT 1 >seq165 Length=164173 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || || || ||| ||| || ||||||||||| || | || || Sbjct 30353 GAGACGCAACACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATG 30412 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| | |||||||| || || ||||| || | ||||| ||||||| ||| || || Sbjct 30413 GCCATCCTTAAGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTC 30472 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGT 195077 ||||| ||||| ||| | || || |||||||| Sbjct 30473 CTTGTCCTGAATCTTTGCAATCACATTTTCAATGGT 30508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107963043519542