Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq186 113 3e-20 seq18 113 3e-20 seq83690 95.1 8e-15 >seq186 Length=148488 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||| |||||| |||||||| Sbjct 13816 TCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAG 13757 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| ||| | || | || |||||||| ||||| |||||| Sbjct 13756 ATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 13697 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || |||||| |||| || ||||| ||||| ||||| ||||| ||| Sbjct 13696 TCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACA 13637 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 13636 AAGATCTGCATA 13625 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || |||| || || || || || ||||| Sbjct 13134 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAA 13075 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | |||||||| || |||||| || || || Sbjct 13074 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTAGCCTTCAC--AT 13017 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| ||| || ||| || || | || ||||| || || || | |||||||| Sbjct 13016 TCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCA 12957 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 12956 CAAAGATCTGCAT 12944 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| |||||||||||| | || |||| || || ||||| || ||||| Sbjct 14045 TTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAA 13986 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||||||||| | || | || || || || |||||| |||||| Sbjct 13985 AATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATT 13926 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | ||||| || | || || || ||||| || ||||| || || Sbjct 13925 TTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAAC 13866 Query 34970 AAAGATCTGCAT 34981 || || ||||| Sbjct 13865 GAAAATTTGCAT 13854 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || ||||| |||| || || ||||| ||||| ||||| || | | | || |||| Sbjct 13383 AAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCC 13324 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || ||||| || || || || || || |||||||||||| | || | |||||||| || Sbjct 13323 TCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCT 13264 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || || || | ||| | ||||| || | ||| |||| Sbjct 13263 TGGATCTTAGCCTTGAC--ATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGG 13206 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || || || || ||||| || ||||| Sbjct 13205 TCTTTCCGGTAAGGGTTTTGACAAAAATTTGCAT 13172 >seq18 Length=974545 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| || || || ||||| || | || |||| || ||||| |||||| Sbjct 449643 GTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCAAGCTGCTTTCCG 449584 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || | || ||||| || | || | ||||||||||| |||||| ||| Sbjct 449583 GCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTC 449524 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | | || | || || || || || | ||| |||||||| ||||| |||||| Sbjct 449523 ACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTC 449464 Query 34965 TTCACAAAGATCTGCATATT 34984 ||||||||||||||||| || Sbjct 449463 TTCACAAAGATCTGCATTTT 449444 >seq83690 Length=433 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| ||||||||||| | || |||| |||| || ||||| || || Sbjct 217 TTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAA 158 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||||||| | || | || |||||||| ||||| |||||| Sbjct 157 GATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 98 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | || || || | ||| ||||| || || ||||| ||||| || Sbjct 97 CTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 38 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 37 AAAGATCTGCAT 26 Score = 89.7 bits (98), Expect = 3e-13 Identities = 131/182 (72%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 34803 TTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGC 34862 || || |||||||| | || |||| || || || ||||||||||| || | || ||| Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 34863 TGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATT 34920 |||||| | || | || |||||||| ||| || ||||| || || || | | Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGAC--ATTCTCAATGGTGT 314 Query 34921 CACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 || || |||||| |||| || |||| | |||| || || ||||| ||||||||||||| Sbjct 313 CAGAGGGCTCAACTTCGAGAGTAATGG-TCTTCCGGTAAGGGTCTTGACAAAGATCTGCA 255 Query 34981 TA 34982 || Sbjct 254 TA 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324210945922128