Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq26202 203 4e-47 seq2745 203 4e-47 seq4578 129 7e-25 >seq26202 Length=13276 Score = 203 bits (224), Expect = 4e-47 Identities = 408/605 (67%), Gaps = 0/605 (0%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| || ||||||||||| ||||| ||||| || | || || || | | |||| Sbjct 1475 AGATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGC 1416 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || ||||| | || ||||| | || | | ||| | |||||| || ||||| Sbjct 1415 TCGTTCGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCG 1356 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| |||||| || || || || |||||||| |||| | | ||| ||| | Sbjct 1355 AAGCTTCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAG 1296 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 |||| || | | | |||||| | ||| |||||||| |||||||| || ||||| ||| Sbjct 1295 TTAGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGC 1236 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 | ||||| || | ||| || || || ||| | | ||| | || | || Sbjct 1235 AGCGTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCA 1176 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || | | ||||||||| || || | ||| || || || |||||||| || || || Sbjct 1175 ATTAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAG 1116 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362 |||| || |||||||| || || || || || | || |||| ||| ||||| || Sbjct 1115 AATCTAGCCTCTGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACA 1056 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 || ||||| ||| ||||| || || || || || ||| || | | ||| Sbjct 1055 ATCCCATCGGAAGCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCC 996 Query 19423 GTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 | | || |||||| | || |||||| || | ||| ||||| || || ||||| || Sbjct 995 TTCAGTGCATTCCAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAG 936 Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACA 19542 || || || |||| ||| ||||| | ||| || ||| | || || |||||||||| || Sbjct 935 GACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACG 876 Query 19543 AATCT 19547 ||||| Sbjct 875 AATCT 871 >seq2745 Length=20976 Score = 203 bits (224), Expect = 4e-47 Identities = 408/605 (67%), Gaps = 0/605 (0%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| || ||||||||||| ||||| ||||| || | ||| || || | | |||| Sbjct 4199 AGATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGC 4140 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || ||||| | || ||||| | || | | ||| | |||||| || ||||| Sbjct 4139 TCGTTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCG 4080 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| ||||| || || || || |||||||| |||| | | ||| ||| | Sbjct 4079 AAGCTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAG 4020 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 |||| || | | | |||||| | ||| |||||||| |||||||| || ||||| ||| Sbjct 4019 TTAGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGC 3960 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 | ||||| || | ||| || || || ||| | | ||| | || | || Sbjct 3959 AGCGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCA 3900 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 |||| | ||||||||| || || | ||| || || || |||||||| || || || Sbjct 3899 ATCAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAG 3840 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362 |||| || || ||||| || || || || || | || |||| ||| ||||| || Sbjct 3839 AATCTAGCCTCGGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACA 3780 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 || ||||| ||| || || || || || || || ||| || | | ||| Sbjct 3779 ATCCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCC 3720 Query 19423 GTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 | | || |||||| | || ||||||| |||| ||| || || || || ||||| || Sbjct 3719 TTCAGTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAG 3660 Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACA 19542 || || || |||| ||| ||||| | ||| || ||| | || || |||||||||| || Sbjct 3659 GACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACG 3600 Query 19543 AATCT 19547 ||||| Sbjct 3599 AATCT 3595 >seq4578 Length=10518 Score = 129 bits (142), Expect = 7e-25 Identities = 767/1232 (62%), Gaps = 31/1232 (3%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| || || ||||||| ||| | || || || ||| || ||||| | ||| Sbjct 6888 TGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAGGAT 6947 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| || || ||||| ||||| ||||| | ||||| | || | Sbjct 6948 TCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAACGAA 7007 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || || || |||| || || | | ||||| ||| | ||| | | Sbjct 7008 TTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAATCCGTT 7067 Query 47508 GGAACAACATTCCAAAAAT--CATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 || | |||| | || | || || || || || || || | ||| | || | Sbjct 7068 GGTTT--CTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTGCGT 7125 Query 47566 ATGTTTTATAAGGACCGTATAGTTT---AGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 |||| | || || || || || ||| | ||| |||||||| ||||| |||| | Sbjct 7126 ATGTCTCGTAGGGTCCA---AGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGT 7182 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCT--GATGATTCAAAAGG 47680 | || || || || || |||| || || ||| | |||||| | || ||| | || Sbjct 7183 AGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTCTTCGCTG--TCATAGGG 7240 Query 47681 ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATG 47740 || | ||| |||| || ||||| ||||| |||||||| || || Sbjct 7241 CAGACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTG 7300 Query 47741 AGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 | |||| || || | || ||||||| ||||| | ||| || || || | ||| || Sbjct 7301 CCTCATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTT 7360 Query 47801 TAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT 47860 | | | | || | | ||| | |||||| || | |||| Sbjct 7361 CAAATTGCGCGTAACAATCTTCGTCACTGCTTTGAGTTTCTCAAAATCGTACGTCTTATC 7420 Query 47861 TA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TT 47915 | || ||| |||| || || |||||||| ||||| || ||||| | ||||| || Sbjct 7421 AGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTT 7480 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 ||| | ||||| || ||||| | || | ||| | ||| || || || | ||| Sbjct 7481 GGACGA--ATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTC 7538 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || ||||| | |||| || || || ||||| | ||| | || || |||||||| Sbjct 7539 TGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCC 7598 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAA--CAGCTCTAGCTT 48093 | ||| | ||| || | ||| | | || || || | | | || || Sbjct 7599 ACTTGACTCTGAATTATGGCAAACCAGAGATCTCTCGCAGGAATTCTCCTGATATACCTA 7658 Query 48094 TATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTA 48153 || | | || || || | || || | | |||| || || | || | | Sbjct 7659 CCTT--CCTTCTCATACTTCATGTACAATTCATTGAATTTCTCACCCCAGCAATCAAACA 7716 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 | || |||| | ||| ||||||||||| ||| ||| |||| | |||||| || Sbjct 7717 ATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCA 7776 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 |||| | ||| || ||||| ||||| ||| || | |||||| | || | | || ||| Sbjct 7777 TAAACAGATCCGGGATCCACAGAGC-ATAGAACAGATCCCTTGCTCGTGCCTTCTCCTTG 7835 Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 || ||||| | || || || | ||| || | || ||| | ||||| || || | || Sbjct 7836 CCCGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAGGTAG 7895 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | |||| || || || || || || ||||| | || | ||| || |||| Sbjct 7896 ATAGCAAAGGCACCGGGACGCTTGTTCCCACCCTGATCAACGTAGCAGGCTGTTGTGTTG 7955 Query 48393 TAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTT 48452 || || | | ||||||||||| ||||| || | |||||||| || | ||||| ||| Sbjct 7956 TAGACACGAAGCATTGGGACAAGGCCATTGGAGGTGCCATTGGTGCCGGCAATATGACTG 8015 Query 48453 CCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 || | ||| | || | | | ||| | || || || || || || || || | Sbjct 8016 CCCCGAGCACGAATGCAGTGCATATT--CACGCCAATTCCTCCGGCAGCCTTTGAGATCA 8073 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 ||||||| | || |||||||| || |||||| Sbjct 8074 GAGCACATTGCTTCAGGGTATCGTAGATTCCT 8105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561358202066640