Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq26202 145 9e-30 seq2745 136 5e-27 >seq26202 Length=13276 Score = 145 bits (160), Expect = 9e-30 Identities = 395/601 (66%), Gaps = 4/601 (1%) Strand=Plus/Minus Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || |||| ||||| ||||| ||||| || ||||||||||| | | |||| || || Sbjct 1469 TTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTC 1410 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 || || || | ||| ||||| | || | | ||| | ||| || |||| || || | Sbjct 1409 GAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTT 1350 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 || ||||||||| || ||||| |||||||| || | | |||| | || |||||| | Sbjct 1349 CCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGT-TCCCCAAAGTT-AG 1292 Query 37344 CTA--TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401 || | | | |||||| | | |||||||||||| || ||||| | | Sbjct 1291 CTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCG 1232 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | ||||| || || ||||| || | ||| || | ||| || || || ||||||| Sbjct 1231 TCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCAATTA 1172 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | | ||| ||||| ||| ||| | ||| || || || |||||||| ||||| || | | Sbjct 1171 GCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATC 1112 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 |||| || | || ||| || || | | || | || | | || ||||| || |||| Sbjct 1111 TAGCCTCTGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCC 1052 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA 37641 |||| ||| ||||||||||| | || | || || | || ||| || | Sbjct 1051 CATCGGAAGCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCA 992 Query 37642 ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTG 37701 | ||||| | || |||||| || | ||| ||||| || || ||||| || | Sbjct 991 GTGCATTCCAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGACG 932 Query 37702 CCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATC 37761 | || |||| |||||| ||| || |||| | || || ||||||| || |||| Sbjct 931 CTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAATC 872 Query 37762 T 37762 | Sbjct 871 T 871 >seq2745 Length=20976 Score = 136 bits (150), Expect = 5e-27 Identities = 393/601 (65%), Gaps = 4/601 (1%) Strand=Plus/Minus Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || |||| ||||| ||||| ||||| || || |||||||| | | |||| || || Sbjct 4193 TTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCGTTT 4134 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 || || || | ||| ||||| | || | | ||| | ||| || |||| || || | Sbjct 4133 GAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTT 4074 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 || |||||||| || ||||| |||||||| || | | |||| | || |||||| | Sbjct 4073 CCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGT-TCCCCAAAGTT-AG 4016 Query 37344 CTA--TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401 || | | | |||||| | | |||||||||||| || ||||| | | Sbjct 4015 CTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCG 3956 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | ||||| || || || || || | ||| |||| | ||| || || || ||||| | Sbjct 3955 TCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAATCA 3896 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | | ||| ||||| ||| ||| | ||| || || || |||||||| ||||| || | | Sbjct 3895 GCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATC 3836 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 |||| || | || ||| || || | | || | || | | || ||||| || |||| Sbjct 3835 TAGCCTCGGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCC 3776 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA 37641 |||| ||| || |||||||| | || | || || | || ||| || | Sbjct 3775 CATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCA 3716 Query 37642 ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTG 37701 | ||||| | || ||||||| |||| ||| || || || || ||||| || | Sbjct 3715 GTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGACG 3656 Query 37702 CCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATC 37761 | || |||| |||||| ||| || |||| | || || ||||||| || |||| Sbjct 3655 CTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAATC 3596 Query 37762 T 37762 | Sbjct 3595 T 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591525864569040