Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7333 150 1e-31 >seq7333 Length=2231 Score = 150 bits (166), Expect = 1e-31 Identities = 392/590 (66%), Gaps = 6/590 (1%) Strand=Plus/Minus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 ||||| || || ||||||| || ||||| ||||| |||||||| ||||||||||| || Sbjct 1568 TTCAGAGGCTCAACGTGATTTAGATAGACATGAGCATCTCCCAGAGTGTGGACAAAATCC 1509 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || || | || | || | ||| || || || ||||| || | ||||||||| ||| Sbjct 1508 CCAGGCTTGAGATCAGTTATGTGGGCGATGATTCGAGTGAGAAGGGCGTAGCTGGCAATG 1449 Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979 || || || || || | ||||| || |||| | || || | ||| || ||||| || Sbjct 1448 TTGAATGGAACACCCAAGCCCATATCTGCCGATCGTTGATACATCTGGCAGGAGAGTTCC 1389 Query 29980 CCGTCGCTCACGTAAAACTGACAC-ATGGTGTGGCACGG-AGGAAGAGCCATGAGGCCCA 30037 || | | |||||||||||| ||| | | ||| || || || || ||||| | | | Sbjct 1388 CCATTGGCCACGTAAAACTG-CACGAGGCAGTGACAGGGTGGGTAGTGCCATTATGGGTA 1330 Query 30038 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGA 30097 | || || ||||| |||| || ||| || |||| || | ||| || | || |||| Sbjct 1329 AATCCACAGGATTCCATGCGCTCATGATAATCCGCCGATCATTTGGCTTCTCCCGGATGC 1270 Query 30098 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT-CATGTCC 30156 | | | | | | |||||||||||| ||| || ||||| || | ||||| | Sbjct 1269 GCTGAATCACCTCCTTCAGCTGATCCACGCCCTGTCCAACGTAGTTATCCTTACATGTGC 1210 Query 30157 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30216 || ||||| || || | |||||| || || || || || |||| || ||||| Sbjct 1209 -CATAGGGGGCTCCAAAGTGACGCCACTGAAAGCCATAAACTGGCCCCAAATCACCCTCC 1151 Query 30217 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 || | | | ||| ||| | |||| || || || | || ||| | | ||||||| Sbjct 1150 TCTCGCTCCGTGAATCCCATTGAATCCAGGAACTCCCTTGTACTGTTCCCATTCCAGATC 1091 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30336 | ||||| | || || | || || || || |||| |||||| | || Sbjct 1090 CCAATGTTCTTCTGCTGCAATTCCTTTGCGTCAGTTGAACCCCTGATGAACCAGATCAAT 1031 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30385 ||||| | || | |||||| || |||||||| || ||||| ||||| Sbjct 1030 TCCTCAGCTACACCTCGCCAAAACACTCTCTTGGTGGTCAGGAGCGGGAA 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408085603635698