Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq18 141 7e-29 seq165 93.3 3e-14 seq7601 84.2 2e-11 >seq18 Length=974545 Score = 141 bits (156), Expect = 7e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | ||| || |||||||| || || ||||||||||| || || | || Sbjct 449664 AGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGG 449605 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| ||||| ||||||| |||| |||||| Sbjct 449604 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCC 449545 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| ||| ||| | | | ||||| | |||||||||| || Sbjct 449544 TTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTG 449485 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | ||| || ||||| |||||||| Sbjct 449484 ATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCAT 449447 >seq165 Length=164173 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | ||| || |||||||| || ||||||||||| || || || | | Sbjct 30354 AGACGCAACACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGG 30413 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || | | |||||| |||||||| ||||| |||||||||| | | || |||||| Sbjct 30414 CCATCCTTAAGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCC 30473 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| | ||| | | | ||| | || || |||| || Sbjct 30474 TTGTCCTGAATCTTTGCAATCACATTTTCAATGGTTATTGAGGGTTCTACTTCCAATGTG 30533 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||| |||| || ||||| |||||||| Sbjct 30534 ATGGTTTTCTCCGT--AAGTCTTCACAAAGATCTGCAT 30569 >seq7601 Length=1932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 7837 ACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGA 7896 |||||| ||| ||||||| || | | ||| |||||| | | || ||| |||||| Sbjct 1013 ACGTTCCGGGAATGGCCGAGGAATCTCAAGATGAAACCCGATGAACTCTGCGATGCTGGA 1072 Query 7897 TTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAA 7956 || | ||||||||| || ||| | |||| ||| ||||| || ||| | || Sbjct 1073 TTCTTCTACACGGGTATTGGGGATCGTGTACAGTGCTTCAGCTGTGGGGGTGGTTTGAAG 1132 Query 7957 GATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCA 8016 ||||||||||| || ||| | ||||||||||| || | |||| ||||| || | | Sbjct 1133 GATTGGGAGGACAATGATTGTGCCTGGGAGCAACATGCTCTGTGGTACGATAACTGTGAA 1192 Query 8017 TATGTCAAA 8025 ||| ||||| Sbjct 1193 TATCTCAAA 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380441641386798