Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq26202 215 1e-50 seq2745 192 1e-43 seq4578 138 2e-27 >seq26202 Length=13276 Score = 215 bits (238), Expect = 1e-50 Identities = 389/563 (69%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | |||||| ||||| || || ||| ||| |||| ||||| ||| Sbjct 1457 CAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTGAGT 1398 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | |||||||||||| |||| ||||| || ||||| Sbjct 1397 CCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAGAAA 1338 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || || || || | | | || || || ||| ||| || ||| Sbjct 1337 ATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGC-TTCCTGACTGGC 1279 Query 48311 A-TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 | |||| || ||||| |||||||||||||||| || |||| |||||| ||||| Sbjct 1278 AATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATT 1219 Query 48370 GAAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGT---AGTGAGCAGCTTTGCG 48424 |||||| || | || |||||| ||| | || || | | ||||| | | Sbjct 1218 GAAGAGGAACT--CTTTCTCCTGCGGATCCCGGATGTACGTGTCAATTAGCAGACT---G 1164 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||||||| |||||||||||| || || ||||| || || |||||| || ||||| Sbjct 1163 TACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCT 1104 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | ||||| || ||| | ||||| ||||||||||||||| |||||||| ||| Sbjct 1103 GTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAA 1044 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTC 48604 || |||||||| || | || || || ||| | | ||| | | || |||||| Sbjct 1043 GCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTC 984 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | | || | ||| |||||||| ||||| |||||||||||||| ||| Sbjct 983 CAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGACGCTTCAGCT 924 Query 48665 TTTTTGTACATGCCCCATATGTC 48687 | ||||||||| |||| ||||| Sbjct 923 TGTTTGTACATCTCCCAGATGTC 901 >seq2745 Length=20976 Score = 192 bits (212), Expect = 1e-43 Identities = 384/563 (68%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | |||||| ||||| || || ||| ||| |||| ||||| ||| Sbjct 4181 CAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCGTTTGAGAATGTGAGT 4122 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | |||||||||||| |||| ||||| || |||||| Sbjct 4121 CCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTGAAGAAA 4062 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || || || || | | | || || || ||| ||| || ||| Sbjct 4061 ATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGC-TTCCTGACTGGC 4003 Query 48311 A-TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 | |||| || ||||| |||||||||||||||| || |||| |||||| ||||| Sbjct 4002 AATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATT 3943 Query 48370 GAAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGT---AGTGAGCAGCTTTGCG 48424 ||| || || | || | || | ||| | || || | | ||||| | | Sbjct 3942 GAACAGGAACT--CTTTCTCTTGAGGATCCCGGATGTACGTGTCAATCAGCAGACT---G 3888 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||||||| |||||||||||| || || ||||| || || |||||| || ||||| Sbjct 3887 TACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCG 3828 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | ||||| || ||| | ||||| ||||||||||||||| |||||||| ||| Sbjct 3827 GTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAA 3768 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTC 48604 || || ||||| || | || || || ||| | | ||| | | || |||||| Sbjct 3767 GCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTC 3708 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | | ||| | || ||||| || || || |||||||||||||| ||| Sbjct 3707 CAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGACGCTTCAGCT 3648 Query 48665 TTTTTGTACATGCCCCATATGTC 48687 | ||||||||| |||| ||||| Sbjct 3647 TGTTTGTACATCTCCCAGATGTC 3625 >seq4578 Length=10518 Score = 138 bits (152), Expect = 2e-27 Identities = 680/1061 (64%), Gaps = 35/1061 (3%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| ||||| ||||| || | || | ||| | ||| || |||||||| |||| Sbjct 3557 TACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAA 3616 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | || || || || |||||||| || || ||||| ||||| || || ||||| | Sbjct 3617 GGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAA 3676 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCC 213094 |||||||| || || | | | || | ||||| |||| | ||| | Sbjct 3677 CGAATTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCA-----C 3731 Query 213095 AGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGG 213154 | | || | || ||| || |||||| || |||| | ||| || |||||||| || Sbjct 3732 AAATCCGT--TGGT--TTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGG 3787 Query 213155 GCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAG 213214 | || ||| | |||||| ||| ||| || |||| ||||| |||| || Sbjct 3788 ACATCCTGCGTACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAA 3847 Query 213215 GGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGT 213274 |||| | ||||||||||| || || || | | ||||| |||||||||||| | Sbjct 3848 GGCACCATAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCCTCTTCGCTATC 3907 Query 213275 GAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGG 213334 |||||| ||| ||| |||| || || ||||| ||||| || || || || Sbjct 3908 ATAGGGCAGACGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGG 3967 Query 213335 TCTGTGTCTCAGGTTAGAC--TTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATG 213392 |||||||||| || ||| || | || ||| || ||| || ||||| ||||||| Sbjct 3968 CCTGTGTCTCATATTGGACAATTTG-GC-CTCTGGCACGGGATAGTAGTTGATGTCGATG 4025 Query 213393 ATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC 213452 | ||||| | ||||| || | | || || || || | ||| | | || Sbjct 4026 ACTTTGTTCAAATTGCGCGTAACAATCTTCGTTACTGCTTTGAGTTTCTCAAAGTCGTAC 4085 Query 213453 ACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCC 213512 || | | ||| || ||| | || || || ||||| ||||| || || Sbjct 4086 --GTCTTATCAG-CCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCA 4142 Query 213513 ACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTG 213572 | ||| | | | || || | || || ||||||| ||||| || || || || Sbjct 4143 ATCTCATCCTTGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTC 4202 Query 213573 CCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGAC 213632 || | ||||| || || ||| |||| | ||| ||||| | |||||| || | | Sbjct 4203 CCAATATTCTGCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTC 4262 Query 213633 CCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCC 213690 || || || | || | | ||| ||| |||||| | ||| || || | | Sbjct 4263 CCAGTTTCCACTTGACTCTGAATTAT--GGCAAACCAGAGATCCCTCGCAG-GA--ATTC 4317 Query 213691 GCCTGACAG--CTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCC 213748 ||||| | || | | | ||| |||| ||| | || ||||| | | || Sbjct 4318 TCCTGATATACCTACCTTCCTT--CTCATACTTCATGTACAATTCATTGAACTTCTCACC 4375 Query 213749 CCAG--ACCCTGTCCAGTCCCGGACAG-GATGCGGGACACATGAGGCTCCAGTCCCCGTC 213805 |||| | | | | ||| |||| ||| ||| |||||| | ||||| ||||| || Sbjct 4376 CCAGCAATCAAAT--AATCCTGGACTCTGATTCGG-ACACATCAAACTCCATTCCCCATC 4432 Query 213806 ATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCC-TGG 213864 || ||||||||||| ||||| ||||||| |||||| || |||||| |||| || Sbjct 4433 TTCAGATACTCTCTGCATAAACAGATCCGGGATCCACAGAGCATAGAACAGATCCCTTGC 4492 Query 213865 TCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGT 213924 || | | || ||| || | ||| || ||||| | ||| ||||| ||||| ||| Sbjct 4493 TCGTGC-CTTCTCCTTGCCCGTGTTCTTCTTGAGATCCAAAAACTCAAAAATGTCACCGT 4551 Query 213925 GCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965 |||| ||||||| |||||| |||||||| || || | |||| Sbjct 4552 GCCAGGGCTCCAGGTAGATAGCAAAGGCACCGGGACGCTTG 4592 Score = 136 bits (150), Expect = 7e-27 Identities = 735/1154 (64%), Gaps = 42/1154 (4%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| ||||| ||||| || | | | ||| | ||| || |||||||| |||| Sbjct 6884 TACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAA 6943 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | || || || || |||||||| || || ||||| ||||| || || ||||| | Sbjct 6944 GGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAA 7003 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCC 213094 |||||||| || || | | | || | | ||| |||| | ||| | Sbjct 7004 CGAATTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCA-----C 7058 Query 213095 AGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGG 213154 | | || || ||| | ||||| || |||||| ||| || |||||||| || Sbjct 7059 AAATCCGTTGGTTTCTTTCCC----CACATTTCGTACTGCAGGATACCCTTGCTCACTGG 7114 Query 213155 GCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAG 213214 | || ||| | |||||| ||| ||| || |||| ||||| |||| || Sbjct 7115 ACATCCTGCGTATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAA 7174 Query 213215 GGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGT 213274 |||| ||||||||||||| || || || | | ||||| |||||||| ||| | || Sbjct 7175 GGCACCGTAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTCTTCGCT-GT 7233 Query 213275 GA-AGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGG 213333 | |||||| ||| ||| |||| ||||| ||||| ||||| || || || | Sbjct 7234 CATAGGGCAGACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTG 7293 Query 213334 GTCTGTGTCTCAGGTTAGAC--TTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGAT 213391 | ||||| |||| || ||| || | | || | | ||| || ||||| |||||| Sbjct 7294 GCCTGTGCCTCATATTGGACAATTTGGCCTCTGGTAC--GGGATAGTAGTTGATGTCGAT 7351 Query 213392 GATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAA 213451 || ||||| | ||||| || | | || || || || | ||| || | | Sbjct 7352 GACTTTGTTCAAATTGCGCGTAACAATCTTCGTCACTGCTTTGAGTTTCTCAAAATCGTA 7411 Query 213452 CACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGC 213511 | || | | ||| || ||| | || || || ||||| ||||| || || Sbjct 7412 C--GTCTTATCAG-CCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGC 7468 Query 213512 CACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGT 213571 | ||| | | | || || | || || ||||||| ||||| || || || || Sbjct 7469 AATCTCATCCTTGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGT 7528 Query 213572 GCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGA 213631 || | ||||| || || ||| |||| | ||| ||||| | |||||| || | Sbjct 7529 CCCAATATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGT 7588 Query 213632 CCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACC 213689 ||| || || | || | | ||| ||| |||||| | || || || | Sbjct 7589 CCCAGTTTCCACTTGACTCTGAATTAT--GGCAAACCAGAGATCTCTCGCAG-GA--ATT 7643 Query 213690 CGCCTGACAG--CTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGC 213747 | ||||| | || | | | ||| |||| ||| | || ||||||| | | Sbjct 7644 CTCCTGATATACCTACCTTCCTT--CTCATACTTCATGTACAATTCATTGAATTTCTCAC 7701 Query 213748 CCCAGACCCTGTC---CAGTCCCGGACAG-GATGCGGGACACATGAGGCTCCAGTCCCCG 213803 ||||| | || || ||| |||| ||| ||| |||||| | ||||| ||||| Sbjct 7702 CCCAG---CAATCAAACAATCCTGGACTCTGATTCGG-ACACATCAAACTCCATTCCCCA 7757 Query 213804 TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863 || || ||||||||||| ||||| ||||||| |||||| || |||||| ||||| Sbjct 7758 TCTTCAGATACTCTCTGCATAAACAGATCCGGGATCCACAGAGCATAGAACAGATCCCTT 7817 Query 213864 G-TCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGC 213922 | || | | || ||| || | || || ||||| | ||| ||||||||||| | Sbjct 7818 GCTCGTGCCTTC-TCCTTGCCCGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACC 7876 Query 213923 GTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCAC 213979 |||||| ||||||| |||||| |||||||| || || | |||| || ||||| || || Sbjct 7877 GTGCCAGGGCTCCAGGTAGATAGCAAAGGCACCGGGACGCTTGTTCCCACCCTGATCAAC 7936 Query 213980 CAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTT 214039 | ||| ||||| ||| || || | || || || || ||||| || || Sbjct 7937 GTAGCAGGCTGTTGTGTTGTAGACACGAAGCATTGGGACAAGGCCATTGGAGGTGCCATT 7996 Query 214040 GGTTCCCGCTATAT 214053 ||| || || |||| Sbjct 7997 GGTGCCGGCAATAT 8010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930288900963840