Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq26202 147 4e-30 seq2745 147 4e-30 seq4578 145 1e-29 >seq26202 Length=13276 Score = 147 bits (162), Expect = 4e-30 Identities = 299/441 (68%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||||||||| |||||||| || || ||||| || || || ||||||||| ||| | | Sbjct 1022 ACGTGTTGGCTTTCTTTGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCT 1081 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| ||| ||||| ||||| | | ||||| || || ||||| ||||| | Sbjct 1082 TCAGTCAGGAGGTGCAAATAACAGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGG 1141 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CGT 25769 | ||||||||| |||| |||| || || || || |||||||| || || Sbjct 1142 AGAATGTGCACAGTGAGATGTA---CAGTCTGCTAATTGACACGTACATCCGGGATCCGC 1198 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | || |||| || || || |||||| ||| | ||| | |||||| |||||| Sbjct 1199 AGGAGAAAGAGTTC--CTCTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAAGAAGGC 1256 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| || ||||||| ||| ||| |||| ||||| || || || | || Sbjct 1257 AGATTGGGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGTGATTGC 1316 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||| ||||| |||||||| || || ||||| || || | |||||||||||||| Sbjct 1317 CTTTGCAGCTGTTGAGGGCATTTTCTTTAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAA 1376 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || | ||||||||| || || || |||||||| ||| | || || || Sbjct 1377 ATCACGTGGCATCATGCCCGGACTCACATTCTCGAACGAGCTGATCTCTCGCGATGAAGG 1436 Query 26010 TCTCCACAGAGATTTTGCCTG 26030 | | ||| | || |||||||| Sbjct 1437 TTTGCACTGTGACTTTGCCTG 1457 >seq2745 Length=20976 Score = 147 bits (162), Expect = 4e-30 Identities = 299/440 (68%), Gaps = 8/440 (2%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||||||||| ||||| || || || ||||| || || || ||||||||| ||| | | Sbjct 3746 ACGTGTTGGCTTTCTTCGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCT 3805 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| ||| ||||| ||||| | | ||||| || || ||||| ||||| | Sbjct 3806 TCAGTCAGGAGGTGCAAATAACCGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGG 3865 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA-CGTC 25770 | ||||||||| |||| |||| || || ||||| |||||||| || | || Sbjct 3866 AGAATGTGCACAGTGAGATGTA---CAGTCTGCTGATTGACACGTACATCCGGGATCCTC 3922 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 |||| ||| ||||| |||||| ||| | ||| | |||||| |||||| Sbjct 3923 AA-GAGAAAGAGTTCCTGTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAAGAAGGCA 3981 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||| || ||||||| ||| ||| |||| ||||| || || || | ||| Sbjct 3982 GATTGGGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGTGATTGCC 4041 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||| ||||| |||||||| || |||||||| || || | |||||||||||||| Sbjct 4042 TTTGCAGCTGTTGAGGGCATTTTCTTCAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAAA 4101 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || | ||||||||| || || || |||||||| ||| | || || || Sbjct 4102 TCACGTGGCATCATGCCCGGACTCACATTCTCAAACGAGCTGATCTCTCGCGATGAAGGA 4161 Query 26011 CTCCACAGAGATTTTGCCTG 26030 | ||| | || |||||||| Sbjct 4162 TTGCACTGTGACTTTGCCTG 4181 >seq4578 Length=10518 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 |||||||||| |||||| | | | || || |||||||| || || ||||||||| Sbjct 4407 GGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCATAAACAGATCCGGGATC 4466 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 ||||| || | || ||||| || | || || |||| ||| |||| ||| | ||| Sbjct 4467 CACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTCTCCTTGCCCGTGTTCTTCTTGAGA 4526 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 ||||||||||||||||||||| ||||||| |||||||| |||| || | || ||||| Sbjct 4527 TCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGGCACCGGGA 4586 Query 222179 CGCTTGTTGCCACCCTGATCCAC 222201 |||||||| ||||| ||||| || Sbjct 4587 CGCTTGTTCCCACCTTGATCAAC 4609 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 |||||||||| |||||| | | | || || |||||||| || || ||||||||| Sbjct 7734 GGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCATAAACAGATCCGGGATC 7793 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 ||||| || | || ||||| || | || || |||| ||| | || ||| | ||| Sbjct 7794 CACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTCTCCTTGCCCGTATTCTTCTTGAGA 7853 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 |||||||||||||| |||||| ||||||| |||||||| |||| || | || ||||| Sbjct 7854 TCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGGCACCGGGA 7913 Query 222179 CGCTTGTTGCCACCCTGATCCAC 222201 |||||||| ||||||||||| || Sbjct 7914 CGCTTGTTCCCACCCTGATCAAC 7936 Score = 100 bits (110), Expect = 5e-16 Identities = 178/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 221356 CACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTG 221415 ||| |||| || |||||| ||||||||| || | || ||| ||||| ||| Sbjct 3782 CACTGGACATCCTGCGTACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAA--CTG 3839 Query 221416 --CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCG 221473 | || |||| | | |||||||||||| ||||| || |||||| |||||||||| Sbjct 3840 GCCTCCAAGGCACCATAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCCTCT 3899 Query 221474 GGAGAAGTGAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 | |||||| ||||| || |||||| | || || || ||||| || || || Sbjct 3900 TCGCTATCATAGGGCAGACGCATCAAAATGAAAG-CATCCGCTAGACCCTGAACCCCAAT 3958 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 || || |||||||||||| | ||||| || |||||||||||||| |||||| Sbjct 3959 CCCAATTGGCCTGTGTCTCATATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGAT 4018 Query 221593 GTCGATCAGATTGTT 221607 |||||| | ||||| Sbjct 4019 GTCGATGACTTTGTT 4033 Score = 96.9 bits (106), Expect = 6e-15 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 || |||| ||| |||||||||||| ||||| || |||||| ||||||| || | Sbjct 7172 CAAGGCACCGTAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTC-TTCGC 7230 Query 221479 AGTGA-AGGGCATACGCAGC-ATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || | |||||| ||||| | | |||||| | || ||||| ||||| || || || || Sbjct 7231 TGTCATAGGGCAGACGCATCAAAATGAAAG-CATCCGCCAGACCCTGAACCCCAATCCCA 7289 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || |||||||| ||| | ||||| || ||||| |||||||| |||||| |||| Sbjct 7290 ATTGGCCTGTGCCTCATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCG 7349 Query 221597 ATCAGATTGTT 221607 || | ||||| Sbjct 7350 ATGACTTTGTT 7360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927604490317440