Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq73 138 2e-27 >seq73 Length=410114 Score = 138 bits (152), Expect = 2e-27 Identities = 262/381 (69%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 47695 CCAACTTCATCAAGACCAGAACCTTCCCATCTAATATTCATATCAAAATAAGGTGCAGAT 47754 |||||||| ||||| ||| |||| ||| ||| | | | ||| ||| | ||| Sbjct 174022 CCAACTTCCTCAAGTCCACTACCTCTCCACTCAATTTCCCGACCAATATAGGCAAAGGAT 174081 Query 47755 TCCTCAACAAACTGACGGACAGAATATTGATT-TCCTGTGGCAATAACAAAATCATCAGG 47813 | |||||||| | ||||| | | | || | ||| || ||||| || |||| | || Sbjct 174082 GCTTCAACAAATTCCCGGAC-GCTTCTCGACTGTCCAGTTGCAATTACGTAATCCTGGGG 174140 Query 47814 TTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTC 47873 ||| | || | ||| | |||||| || || || || ||| | |||||||||||||| Sbjct 174141 CGTTTCACGCTGCAACATAAGCCACATCGCTTCTACGTAGTCTTTAGCATGTCCCCAGTC 174200 Query 47874 ACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTT 47933 ||| | | ||| ||||| || || | ||| || | ||| |||||| ||| Sbjct 174201 ACGTCGGGAATCGAGATTGCCGAGTTCAAAATTTTCCATTTGACCCAAAGAGAT--CTTG 174258 Query 47934 --TAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGA 47991 || | || ||||||||||| || ||||| |||| || || | |||||| |||||| Sbjct 174259 GCTACAGATCGGGTAATCTTACGCGTGACAAAGTTTTCTCCTCGACGTGGAGACTCATGA 174318 Query 47992 TTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATC 48051 || || || || ||| |||||||| ||||||| || | ||| || |||||| || ||| Sbjct 174319 TTGAAGAGGATCCCATTACAGGCAAACATTCCATAGGCTTCCCGGTAGTTCACAACGATC 174378 Query 48052 CAGTACCCATAGAGTTTTGCA 48072 || | ||||| | ||| ||| Sbjct 174379 CAAAATCCATACATTTTAGCA 174399 Score = 89.7 bits (98), Expect = 7e-13 Identities = 175/258 (68%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 ||||||||| || | ||||||||| || || |||| |||| || |||||| || || Sbjct 178495 ACCATAAGGTGATCTTGGATAGAACGGAGTCTTCTCATTCTGAGGTGTCTCTACTACTTT 178554 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAG--- 48191 ||||| || || ||||||||||||||| | | || || || |||| || Sbjct 178555 TCCATAGAGCTCTGACGTGGATGCTTGATAG------AACTTAACTGCCTTCTCGAGTCC 178608 Query 48192 -CAA--ACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATA 48248 ||| |||| || || | || |||||| || || | ||||| | | ||||||| Sbjct 178609 ACAAGTCCGGATGGCGTCTAACAGTCTCAGAGTTCCAACTGCATCAACTTCAGCAGTATA 178668 Query 48249 CTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATC 48308 || | | ||||| || || || |||||| |||||| | ||||| || ||||| Sbjct 178669 TTCCGAGAGGTCAAAGGACACTTTAACATGAGACTGTGCTGCCAGATTGTAGATCTCTGT 178728 Query 48309 TGGTTGAACCTGCTGAAT 48326 || | |||| |||||| Sbjct 178729 AGGACGCACCTTCTGAAT 178746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664605748690320