Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4578 190 2e-43 >seq4578 Length=10518 Score = 190 bits (210), Expect = 2e-43 Identities = 472/702 (67%), Gaps = 37/702 (5%) Strand=Plus/Minus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||| ||||| || || || ||| | ||||| ||||| || |||| ||||||||| || | Sbjct 4271 GGAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGCAACAGGAAGAGTAATCAGCA 4212 Query 75964 GAATTTGGGAACAAT---CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGA 76020 |||| | || ||||| | ||| ||| | ||||| |||||| |||| || | Sbjct 4211 GAATATTGGGACAATTCGCTGTAGC---AATTTGTGCACAGAAATTGTAGAATATTCGTC 4155 Query 76021 TAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA 76080 |||||||||| ||||| |||||| ||||||| || || || ||| ||||| | | Sbjct 4154 CAAGGATGAGATTGCTGTGTGCAATCTGGCATCTATTGCTCT--CAA--TATGTTCGTAA 4099 Query 76081 AGA--GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAA 76138 || || | || | || | ||| ||||| | | | | || ||||||||||| Sbjct 4098 AGGCTGATAAG-ACGTACGACTTTGAGAAACTCAAAGCAGTAACGAAGATTGTTACGCGC 4040 Query 76139 AATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAA--GTCTA 76196 ||| | ||| |||||| |||| || | |||||||| | | | || ||| ||| | Sbjct 4039 AATTTGAACAAAGTCATCGACATCAACTACTATCCCGT-GCCAGAG-GCCAAATTGTCCA 3982 Query 76197 ATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG- 76255 ||||| ||||||| || ||||| | || ||||| ||||| ||||||| || |||||| Sbjct 3981 ATATGAGACACAGGCCAATTGGGATTGGGGTTCAGGGTCTAGCGGATGCTTTCATTTTGA 3922 Query 76256 TGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACC 76315 ||| || | | | |||| || || |||||| | | ||| | ||||| || ||| Sbjct 3921 TGCGTCTGCCC-TATGATAGCGAAGAGGCCAAGAAACTCAATCAGCAAATCTTCGAGACC 3863 Query 76316 ATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAG 76375 || || | | || ||||||| ||||| ||||||||||| | || |||| ||| Sbjct 3862 ATCTACTATGGTGCCTTGGAGGCCAGTTGCGAATTGGCTGAGAAGCTTGGACCCTACGAG 3803 Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAA 76435 || | | || | ||| | | | | || | ||||||| || ||||||| | ||| Sbjct 3802 ACGTACGCAGGATGTCCAGTGAGCAAGGGTATCCTTCAGTACGAGATGTGGG-ACAAGAA 3744 Query 76436 ACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAA-------CGCATCAAGGAGAAG 76486 ||||| | | | | | ||||||| || |||| | | || || || | Sbjct 3743 ACCAA-CGGATTTGTGGAATTGGGATGAGCTAAAGGCAAAAATTGCCCAACATGGTGTGA 3685 Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 || ||||| | || | || |||||||||||||| || || || || || | Sbjct 3684 GGAATTCGT-------TGCTGGTTGCCCCAATGCCAACAGCTTCAACGGCCCAGATTCTA 3632 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 || |||||||||| ||| ||||| |||||| | ||||| ||| Sbjct 3631 GGCAATAATGAATCCTTCGAACCCTACACATCCAACATGTAC 3590 Score = 185 bits (204), Expect = 1e-41 Identities = 471/703 (67%), Gaps = 39/703 (6%) Strand=Plus/Minus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||| ||||| || || || ||| | ||||| ||||| || |||| |||||| || || | Sbjct 7598 GGAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGCAACAGGAAGAGCAATCAGCA 7539 Query 75964 GAATTTGGGAACAAT---CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGA 76020 |||| | || ||||| | ||| ||| | ||||| |||||| |||| || | Sbjct 7538 GAATATTGGGACAATTCGCTGTAGC---AATTTGTGCACAGAAATTGTAGAATATTCGTC 7482 Query 76021 TAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA 76080 |||||||||| ||||| |||||| ||||||| || || || ||| ||||| | | Sbjct 7481 CAAGGATGAGATTGCTGTGTGCAATCTGGCATCTATTGCTCT--CAA--TATGTTCGTAA 7426 Query 76081 AGA--GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAA 76138 || || | || | |||| ||| ||||| | | | | || ||||||||||| Sbjct 7425 AGGCTGATAAG-ACGTACGATTTTGAGAAACTCAAAGCAGTGACGAAGATTGTTACGCGC 7367 Query 76139 AATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAA--GTCT 76195 ||| | ||| |||||| |||| || | |||||||| ||| || ||| ||| Sbjct 7366 AATTTGAACAAAGTCATCGACATCAACTACTATCCCGTACCAGAG---GCCAAATTGTCC 7310 Query 76196 AATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG 76255 |||||| | ||||| || ||||| | || ||||| ||||| ||||||| || |||||| Sbjct 7309 AATATGAGGCACAGGCCAATTGGGATTGGGGTTCAGGGTCTGGCGGATGCTTTCATTTTG 7250 Query 76256 -TGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAAC 76314 ||| || | | | ||| || ||||||||| | | ||| | ||||| || || Sbjct 7249 ATGCGTCTGCCC-TATGACAGCGAAGAAGCCAAGAAACTCAATCAGCAAATCTTCGAGAC 7191 Query 76315 CATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGA 76374 ||| || ||| || ||||||| ||||| ||||||||||| | || |||| || Sbjct 7190 CATCTACTACGGTGCCTTGGAGGCAAGTTGCGAATTGGCTGAGAAGCTTGGACCCTACGA 7131 Query 76375 GACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGA 76434 ||||| | || | ||| | | | | || | || |||| || ||||||| | || Sbjct 7130 GACATACGCAGGATGTCCAGTGAGCAAGGGTATCCTGCAGTACGAAATGTGGGGA-AAGA 7072 Query 76435 AACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAA-------CGCATCAAGGAGAA 76485 |||||| | | | | | ||||||| | |||| | | || || || | Sbjct 7071 AACCAA-CGGATTTGTGGAATTGGGATGAGTTAAAGGCAAAAATTGCCCAACATGGCGTG 7013 Query 76486 GGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTT 76545 || ||||| | || | || |||||||||||||| || || || || || | Sbjct 7012 AGGAATTCGT-------TGCTGGTTGCCCCAATGCCAACAGCTTCAACGGCCCAGATTCT 6960 Query 76546 GGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 || |||||||||| ||| ||||| |||||| | ||||| ||| Sbjct 6959 AGGCAATAATGAATCCTTCGAACCCTACACATCCAACATGTAC 6917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595772985698880