Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq186 114 2e-20 seq60870 95.1 2e-14 seq83690 93.3 8e-14 seq18 89.7 9e-13 seq7722 84.2 4e-11 >seq186 Length=148488 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || |||||||| || | || || || ||||| ||||||||||| Sbjct 14009 ATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTT 13950 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| ||| | |||| ||| ||||| || | |||||||| ||||| || Sbjct 13949 ATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAAT 13890 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || |||||||| Sbjct 13889 TGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || || ||||| | |||| ||| || ||||| ||||| Sbjct 13627 ATACCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCA 13568 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | ||| ||||||||||| || || | |||||| || || Sbjct 13567 GACAGGGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGT 13508 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || | ||||| || | ||| ||||||||| |||| || Sbjct 13507 GGGATCCCCTCCTTATCCTG-AATTTGGCCTTCACGTTT-CAATAGTATCAGAAGGTTCG 13450 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || ||||| || ||||| Sbjct 13449 ACCTCAAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 13400 >seq60870 Length=785 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || ||||||| ||| | |||||| |||||| || || || Sbjct 749 ACCACCACGAAGGCGAAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGA 690 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | ||| |||||||| ||||| ||||||||||| | || ||||| || || Sbjct 689 AAGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGG 630 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || || |||||||| || || |||| ||| | |||| Sbjct 629 GATGCCCTCTTTATCCTGAATCTTGGCTTTAACATTT 593 >seq83690 Length=433 Score = 93.3 bits (102), Expect = 8e-14 Identities = 115/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || || | ||| || || ||||| |||||||| || Sbjct 408 ATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGAGGGATTCCTTCCTT 349 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | || | ||| ||| || || || | ||||||||| ||||| || Sbjct 348 GTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCAGAGGGCTCAACTTCGAGAGTAAT 289 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || ||||| Sbjct 288 GGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || || ||||| | || | || || ||| || ||||| Sbjct 255 ATACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCC 196 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| ||||| || || || | | ||| || || ||| Sbjct 195 GAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGA 136 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || |||| || | || |||||||||||||| || Sbjct 135 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCG 76 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || ||||| || ||||| Sbjct 75 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 >seq18 Length=974545 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || | ||| ||||| ||||| ||||| || || || || || Sbjct 449592 TGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATC 449533 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | |||| ||| ||||| || | || || || | || || ||||| || Sbjct 449532 TTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCC 449473 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || ||||| || |||||||| Sbjct 449472 GTAAGAGTCTTCACAAAGATCTGCATTTT 449444 >seq7722 Length=1803 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||||| ||| | |||||| |||||| || || || | || | | Sbjct 131 CGAAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCA 72 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||||||| ||||| ||||||||||| | || ||||| || || || || |||||| Sbjct 71 TCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTA 12 Query 193266 TCTTGTATTTT 193276 || || || || Sbjct 11 TCCTGAATCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898453068988320