Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2745 125 1e-23 seq26202 120 4e-22 seq186 102 1e-16 >seq2745 Length=20976 Score = 125 bits (138), Expect = 1e-23 Identities = 374/580 (64%), Gaps = 0/580 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||| ||| ||| || |||||||| | || || | ||||| || || Sbjct 4184 AAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCGTTTGAGAATGTG 4125 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | |||||||| || || | | ||| ||||| || || || ||||| || | ||| Sbjct 4124 AGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTGAAG 4065 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || || |||||||| || || || || | | ||| |||| | || | || Sbjct 4064 AAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTG 4005 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 ||||| | | ||||| ||| | | | ||| || | |||| || ||| Sbjct 4004 GCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCA 3945 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || |||| ||||| |||| | ||| || || ||||| || | || | ||| Sbjct 3944 TTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAATCAGCAGACTGTAC 3885 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 || ||| || | | ||||| || |||||||| | ||| || |||||||||||| Sbjct 3884 ATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCGGTT 3825 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| | ||| | || | || |||| ||||||||| || || || || | || Sbjct 3824 ATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCG 3765 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 ||||| || ||||| || | |||||| | | ||| |||||| || ||||| Sbjct 3764 GCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTCCAG 3705 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | ||| |||||| |||||||| || || || ||||| || || | ||| || ||| Sbjct 3704 TGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGACGCTTCAGCTTGT 3645 Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATA 18734 |||||||| | | || || | | || |||||||||| Sbjct 3644 TTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATA 3605 >seq26202 Length=13276 Score = 120 bits (132), Expect = 4e-22 Identities = 373/580 (64%), Gaps = 0/580 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||| ||| ||| ||||||||||| | || || | ||||| || || Sbjct 1460 AAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTG 1401 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | |||||||| || || | | ||| ||||| || || || ||||| || | |||| Sbjct 1400 AGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAG 1341 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || || |||||||| || || || || | | ||| |||| | || | || Sbjct 1340 AAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTG 1281 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 ||||| | | ||||| ||| | | | ||| || | |||| || ||| Sbjct 1280 GCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCA 1221 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || || | ||||| || | | ||| || || ||||| |||| || | ||| Sbjct 1220 TTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCAATTAGCAGACTGTAC 1161 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 || ||| || | | ||||| || |||||||| | ||| || |||||||||| | Sbjct 1160 ATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCTGTT 1101 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| | ||| | || | || |||| ||||||||| || || || || | || Sbjct 1100 ATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCG 1041 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || || ||||| || | |||||| | | ||| |||||| || ||||| Sbjct 1040 GCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTCCAG 981 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | ||| ||||| || ||||| ||||| ||| ||||| || || | ||| || ||| Sbjct 980 TGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGACGCTTCAGCTTGT 921 Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATA 18734 |||||||| | | || || | | || |||||||||| Sbjct 920 TTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATA 881 >seq186 Length=148488 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| |||| ||||| || ||||| | ||||| ||| ||| Sbjct 13854 ATGCAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCT 13913 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| || || || ||||||||||| || |||||||| || Sbjct 13914 GATACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 13973 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||||| ||| || || || || || ||| Sbjct 13974 CAACGTTTGATTTTTGCTGGGAAACAACTTGAGGAT 14009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || ||||| || || || | ||||| ||| || Sbjct 13171 AATGCAAATTTTTGTCAAAACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAACCATC 13230 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || ||| || |||||||| || || || || ||||| || Sbjct 13231 TGACACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCA 13290 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | |||| || || ||||||||||| ||| | || || || || || || Sbjct 13291 GCAACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGTCCGACTACAA 13350 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| | || |||||||| || ||| Sbjct 13351 CATCCAGAAGGAGTCTACCCTTCATTTGGTCTTA 13384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730894713021600