Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq186 118 2e-21 seq18 96.9 7e-15 seq83690 84.2 4e-11 >seq186 Length=148488 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| |||||||| || | || | || | ||| || ||| || || ||| Sbjct 13855 ATGCCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 13796 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| ||||| || |||||||| || | ||| ||||| ||| Sbjct 13795 GAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGT 13736 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || || || |||| || || | || Sbjct 13735 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCA 13676 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||||||||| || ||||| | || || | ||| |||||||| Sbjct 13675 ACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 98.7 bits (108), Expect = 2e-15 Identities = 167/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 192300 TTTAAT--AATA-CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGAT 192356 |||||| |||| ||||| | |||||| | || | ||| | || | || || ||| Sbjct 14093 TTTAATCTAATATCCACCACGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGAT 14034 Query 192357 ATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTG 192416 || || || || | || || |||| || | |||||| |||||||| || || | || Sbjct 14033 GTTGTAGTCCGAAAGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTG 13974 Query 192417 TTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATC 192476 || || || || |||||||||||||| || || || ||| ||||| || | ||| Sbjct 13973 CTGGTCTGGAGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATC 13914 Query 192477 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| ||||| |||||||| || || || || | ||||||| || || ||||| Sbjct 13913 AGATGGTTCAACTTCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 >seq18 Length=974545 Score = 96.9 bits (106), Expect = 7e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 || || ||||| | ||||| || || | ||| | || ||| || |||||| ||| Sbjct 449679 ATGATGCCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAA 449620 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | ||| || |||| || | || || || |||||||| || | ||| ||||| Sbjct 449619 TCCGACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCC 449560 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || ||||| || || || || || || ||| ||||| || | |||||| | | Sbjct 449559 GGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGT 449500 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || | || |||||||| || || | || || | ||| ||||||||||| Sbjct 449499 TCCACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTT 449444 >seq83690 Length=433 Score = 84.2 bits (92), Expect = 4e-11 Identities = 128/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 192356 TATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT 192415 |||| ||||| || | || || |||| || | ||| || || |||||||| || | || Sbjct 433 TATTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCT 374 Query 192416 GTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT 192475 | || || || || |||||||| || || || |||||| || ||||| || | | Sbjct 373 GCTGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGT 314 Query 192476 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | || | || ||||| ||||||||||| || || || | || || | ||| ||||||| Sbjct 313 CAGAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCA 255 Query 192536 T 192536 | Sbjct 254 T 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983132534225100