Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq186 104 4e-17 >seq186 Length=148488 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| ||||||||||| || | || ||||| || || |||||||||||| Sbjct 14008 TCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTA 13949 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || ||| ||||| || ||||| || | ||| ||||| |||||||| Sbjct 13948 TCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATT 13889 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | ||||||| ||| || ||||| Sbjct 13888 GTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || ||||| || | || | || | ||| || || || || || Sbjct 13855 ATGCCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 13796 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || ||||| ||||| || ||||| || || | ||| || || ||| Sbjct 13795 GAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGT 13736 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || || || || || ||||| || || | || Sbjct 13735 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCA 13676 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| || ||||| | || || | || |||||||| Sbjct 13675 ACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || | ||| | |||| ||| || ||| || || || Sbjct 13173 ATTCCACCACGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCA 13114 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||| || ||||||||||| | | ||| ||||| || Sbjct 13113 GAAAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGG 13054 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || ||| || ||||| || ||||| || | || Sbjct 13053 GGAATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCG 12994 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || ||||| ||||| ||||| || || || || | || ||||||||| || Sbjct 12993 ACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATTCTA 12940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903927349270800