Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4578 140 1e-27 seq6054 120 9e-22 seq38382 109 2e-18 seq1779 87.8 5e-12 >seq4578 Length=10518 Score = 140 bits (154), Expect = 1e-27 Identities = 413/624 (66%), Gaps = 21/624 (3%) Strand=Plus/Plus Query 155540 TTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAG 155599 |||| || | || | || ||||| | ||||| |||||| ||| ||||||| ||||| Sbjct 7397 TTTCTCAAAATCGTACGTCTTATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAG 7456 Query 155600 ATTACATACCGCAGTCTC---CTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTT 155656 ||| || || ||| |||| |||| | || ||||||||||| || ||||| || Sbjct 7457 ATTGCACACAGCAATCTCATCCTTG--GACGAA-TATTCTACAATTTCTGTGCACAAATT 7513 Query 155657 AGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTA 155716 || || || || | ||||| ||| || || ||||| || ||||| ||||| Sbjct 7514 GCTACAGCGAATTGTCCCAATATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTA 7573 Query 155717 TAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTT---AGCCAGAGGTC 155773 | ||||| || || || || |||| || || || |||| | | |||||| || Sbjct 7574 CAACATGTACGGCGTCCCAGTTTCCA-CT-TGACTCT-GAATTATGGCAAACCAGAGATC 7630 Query 155774 ACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCG 155833 | ||| |||| | || | || || |||||| |||||| ||||| |||| ||| Sbjct 7631 TCTCGCAGGAATTCTCCTGATATACCTACCTTCCTTCTCATACTTCATGTACAA--TTCA 7688 Query 155834 GTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891 | | | |||||| | |||||| || ||| || | || || || || | || | Sbjct 7689 TTGAATTTCTCACCCCAGCAATCAAACAATCCTGGACTCTGATTCGGACACATCAAACTC 7748 Query 155892 CAAATTTTAT-TACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 || || | | ||| || | || |||||| | ||| ||| | ||||||||| Sbjct 7749 CATTCCCCATCTTCAGAT-ACTCTCTGCATAAACAGATCCGGGATCCACAGAGCATAGAA 7807 Query 155951 AAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 || |||||||| || || ||| | ||| ||||||| || || || || || Sbjct 7808 CAGATCCCTTGCTCGTGCCTTCTCCTTGCCCGTATTCTTCTTGAGATCCAAAAACTCAAA 7867 Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACC 156067 || ||| || |||||||| || |||||||| ||| | |||| ||||| Sbjct 7868 GATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGGCACCGGGACGCTTGTTCCCACC 7927 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGA 156127 |||||| || || | || || | ||| |||||| ||||| || | || |||||||| Sbjct 7928 CTGATCAACGTAGCAGGCTGTTGTGTTGTAGACACGAAGCATTGGGACAAGGCCATTGGA 7987 Query 156128 AGTGCCATTGGTTCCGCGAATATG 156151 ||||||||||| ||| |||||| Sbjct 7988 GGTGCCATTGGTGCCGGCAATATG 8011 Score = 113 bits (124), Expect = 1e-19 Identities = 395/601 (66%), Gaps = 23/601 (4%) Strand=Plus/Plus Query 155522 CTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACC 155581 ||| ||||| || | |||| || |||| | || ||||| | ||||| |||||| Sbjct 4052 CTTCGTTACTGCTTTGAGTTTCTCAAAGTCGTACGTCTTATCAGCCTTTACGAACATATT 4111 Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTC---CTTGTCGTCGCTGTATTCTAC 155638 ||| ||||||| |||||||| || || ||| |||| |||| | || |||||||| Sbjct 4112 GAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTG--GACGAA-TATTCTAC 4168 Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698 ||| || ||||| || || || || || | ||||| ||| ||| || || Sbjct 4169 AATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTGATTACTCTTCCT 4228 Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 ||| || ||||| ||||| | ||||| || || || || |||| || || | | |||| Sbjct 4229 GTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCA-CT-TGACT-CTGAAT 4285 Query 155759 CTT---TAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815 | | |||||| || | ||| |||| | || | || || |||||| |||||| Sbjct 4286 TATGGCAAACCAGAGATCCCTCGCAGGAATTCTCCTGATATACCTACCTTCCTTCTCATA 4345 Query 155816 TTTCATATACAGCGTTC--GGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTA 155873 ||||| |||| ||| | | | |||||| | |||||| | ||| || | || | Sbjct 4346 CTTCATGTACA--ATTCATTGAACTTCTCACCCCAGCAATCAAATAATCCTGGACTCTGA 4403 Query 155874 TCGGGGCAAAACAGCGACCAAATTTTAT-TACCGATTACACGCTCCATAAATACATCACT 155932 | || || | || ||| || | | || ||| | || |||||| | ||| Sbjct 4404 TTCGGACACATCAAACTCCATTCCCCATCTTCAGA-TACTCTCTGCATAAACAGATCCGG 4462 Query 155933 CGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCG-CCGTGATTCTTCC 155991 ||| | ||||||||| || |||||||| || || ||| | | ||||| |||||| Sbjct 4463 GATCCACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTCTCCTTGCCCGTG-TTCTTCT 4521 Query 155992 GTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTAC 156051 || || || || || ||| ||| || |||||||| || |||||||| || Sbjct 4522 TGAGATCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGGCAC 4581 Query 156052 C---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCA 156108 | | | | || ||||| ||||| || || | || ||| | ||| |||||| |||| Sbjct 4582 CGGGACGCTTGTTCCCACCTTGATCAACGTAGCAGGCTGTCGTGTTGTAGACACGAAGCA 4641 Query 156109 T 156109 | Sbjct 4642 T 4642 >seq6054 Length=5425 Score = 120 bits (132), Expect = 9e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 289016 CGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||| |||||| | || || |||||||||||||||||||| | | ||| |||| || || Sbjct 3839 CGCCCCTTTTCCTGCCCACTGCATCAATTTCGTCAATGAACAGAATACATGGAGCATGTT 3780 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 ||| || || || || | ||||| || | |||| ||||| ||| ||| ||||||| | Sbjct 3779 TTCTGGCCATGGCGAACATATCTCTCACTCTTGATGGTCCAACACCCACAAACATTTCGA 3720 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 |||||| || | || ||| || || | ||| || || || || ||| ||| | | Sbjct 3719 GAAATTCTGAGCCAGACACTGTGATAAAGGGTACGTTCGCCTCACCGGCTGTTGCTTTTG 3660 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 |||| ||||| || || ||||| || || ||| | | |||| ||||||| ||| | Sbjct 3659 CCAGGAGTGTTTTTCCCGTTCCTGGAGGACCCGTCAGCATTGCTCCTTTTGGTATTTTAG 3600 Query 289256 CCCC 289259 | || Sbjct 3599 CTCC 3596 >seq38382 Length=1690 Score = 109 bits (120), Expect = 2e-18 Identities = 215/312 (69%), Gaps = 12/312 (4%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| || ||||| ||||||| || ||| | | |||||| ||||| ||||| || Sbjct 275 ATTCCTCACGGTGCCATCATAATGAACCATCACGGACTCCATAGCTTTGATCAAACGTCG 334 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| | |||||| |||||||||||||| | || |||| || || Sbjct 335 CTGGATATATCCAGTTTCTGCTGTTTTCACAGCTGTATCAATCAATCCCTCACGTCCTCC 394 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCG---TAGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||| || || ||| ||| ||||| | | || || | | | |||| |||| || Sbjct 395 CATGGCGTGAAAG--TAG-AATTCCGATGGAGTAAGACCGGCTAGATAGGAATTCTCCAC 451 Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||| || | | ||| || || |||| || |||| | || || |||| || || || Sbjct 452 GAATCCTCTAGACTCCGGACCGTAATCATC---CTTGATGAAATGCGGCAATGTTCTCTT 508 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 | || |||| ||||||||||| || ||||| ||||| || | || | ||| | Sbjct 509 ACGGAAACCAAATGGAATACGCTTTCCTTCTACGTTTTGCTGACCTACACAGGCAATAAC 568 Query 302832 CTGCGAAATATT 302843 ||| |||||||| Sbjct 569 CTGGGAAATATT 580 >seq1779 Length=32554 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 252560 ACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGT 252619 || |||| | || || || ||||||||||||||||| || || |||||| |||||||| Sbjct 12055 ACTTACCCATGGCTTGTTTCCCCATAGCACTCTGGTAGGTGTTCCTGGGACTCTGATTGT 11996 Query 252620 TTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCAC 252679 |||||||| |||||| || || ||| || || || || || |||||||||| Sbjct 11995 GATCCGGGAAGGGAATGATAGAGGCACAAACCCCCAAAATCATGGCCGGATGAATTTCAC 11936 Query 252680 AGTGACTGTAA 252690 ||||| | ||| Sbjct 11935 AGTGAGTATAA 11925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469803111292362