Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq773 156 5e-32 seq5119 102 1e-15 seq57024 93.3 5e-13 seq14 93.3 5e-13 >seq773 Length=54406 Score = 156 bits (172), Expect = 5e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| ||||| || | ||||| || ||| | | ||||| ||| | Sbjct 40983 AGAAGCGCACCGATGACATTTCCTCCTGGGATGCAGATTTTCTCAAAGTCGATCAGGGAA 41042 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || |||||| ||||||| || || |||||||||||||||||| || |||||| | Sbjct 41043 CGCTGTTTGAGCTGATCCTGGCAGCGAACTACCTCGACATCAAGGGACTCCTCGATGTCA 41102 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | ||||| || ||||||||||||||| | || ||||||||||||||||| | Sbjct 41103 CCTGCAAGACCGTGGCAAATATGATCAAGGGCAAGACACCAGAGGAGATCCGCAAGACAT 41162 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 41163 TCAACATCAAG 41173 >seq5119 Length=8184 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | || |||||||| |||||||||||||| | || Sbjct 5957 GCTTGGCCAACTCTCCGGGCAGCAGGAGACGCACGGCAGTCTGGATCTCGCGACTCGTGA 5898 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || |||||||| ||||| | | ||||| |||| | Sbjct 5897 TGGTCGAGCGCTTGTTGTAATGGGCCAGACGAGAAGCCTCTGCAGCAATGCGCTCGAAGA 5838 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||| ||| | ||| || |||||| ||| || | Sbjct 5837 TGTCATTCACGAAGCTGTTCATGATGCTCATGGCTTTGCTGCTGATGCCAGTGTCAGGAT 5778 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||| ||||||||| Sbjct 5777 GGACCTGCTTCAGCACTTTGTAGATG 5752 >seq57024 Length=3436 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| | || ||||| || |||||||||||||| | || Sbjct 1963 GCTTGGCCAATTCTCCGGGCAGCAGGAGACGCACAGCAGTCTGGATCTCGCGACTCGTGA 1904 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || |||| ||| ||||| | | ||||| |||| | Sbjct 1903 TGGTCGAGCGTTTGTTGTAATGGGCCAAACGAGAAGCCTCTGCAGCAATGCGCTCGAAAA 1844 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||| ||| | ||| || |||||| ||| || | Sbjct 1843 TGTCATTCACGAAGCTGTTCATGATACTCATGGCTTTGCTGCTGATGCCAGTGTCAGGAT 1784 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||| ||||||||| Sbjct 1783 GGACCTGCTTCAGCACTTTGTAGATG 1758 >seq14 Length=1125534 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| | || |||||||| |||||||||||||| | || Sbjct 773859 GCTTGGCCAATTCACCGGGCAGCAGGAGACGCACGGCAGTCTGGATCTCGCGACTCGTGA 773918 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || |||||||| ||||| | | ||||| || | | Sbjct 773919 TGGTCGAGCGCTTGTTGTAATGGGCCAGACGAGAAGCCTCTGCAGCAATGCGCTCAAAAA 773978 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || || || || |||||||| ||| | ||| || |||||| ||| || | Sbjct 773979 TATCATTCACGAAGCTGTTCATGATACTCATGGCTTTGCTGCTGATGCCAGTGTCAGGAT 774038 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| ||||| ||||||||| Sbjct 774039 GGACTTGCTTCAGCACTTTGTAGATG 774064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6098372558173842