Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4578 214 2e-50 seq186 136 4e-27 seq18 123 2e-23 seq2952 113 4e-20 seq83690 102 7e-17 seq165 87.8 2e-12 >seq4578 Length=10518 Score = 214 bits (236), Expect = 2e-50 Identities = 499/747 (67%), Gaps = 18/747 (2%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| |||||||||| | |||||| || ||| |||||| ||| | || || || Sbjct 3558 ACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAAG 3617 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 ||||| || || || |||||||| ||||| | || || ||||| || |||| | Sbjct 3618 GATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAAC 3677 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 ||||||| | ||| || | ||| | |||| ||| ||| | ||||||||| Sbjct 3678 GAATTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAATCC 3737 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCG 138747 | ||||| |||| |||||| |||||||| | || ||| || | |||| ||| || Sbjct 3738 GTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTGCG 3797 Query 138748 TACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAG 138807 |||| ||||| |||| || | ||||| ||| || ||||| | ||||||||| Sbjct 3798 TACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAG 3857 Query 138808 TAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATG 138867 || || || ||| || ||||||||||| |||||| |||| || || |||| Sbjct 3858 TAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCCTCTTCGCTATCATAGGGCAGA 3917 Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 || | || |||| || || || || || || || || | || | || | || | | Sbjct 3918 CGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTC 3977 Query 138928 AGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAA 138987 | ||| ||| ||| || || | ||||| ||||| | ||||||| |||||| ||| Sbjct 3978 ATATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAA 4037 Query 138988 TTTCGCACGACCACCTTAGTCGTA-TGCTTT-AATCGTTCAAAATCGTATGTGCCCCCGT 139045 || ||| || | ||| || || |||||| | | ||||| ||||| || | Sbjct 4038 TTGCGCGTAACAATCTTCGT--TACTGCTTTGAGTTTCTCAAAGTCGTACGT------CT 4089 Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105 | | | | | || || | |||| | ||| || || | |||||||| || | Sbjct 4090 TAT------CAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAA 4143 Query 139106 CTTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 || | | || || ||||| |||||||| | |||||||| ||||| || || Sbjct 4144 TCTCATCCTTGGACG-AATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTC 4202 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || | ||| || ||||| || || | ||| || ||||||||||| | ||| ||||| || Sbjct 4203 CCAATATTCTGCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTC 4262 Query 139225 CCAGTTTCCACTTGTGTCTCTATAATG 139251 |||||||||||||| ||| || ||| Sbjct 4263 CCAGTTTCCACTTGACTCTGAATTATG 4289 Score = 197 bits (218), Expect = 1e-45 Identities = 494/746 (66%), Gaps = 16/746 (2%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| |||||||||| | |||||| || ||| |||||| ||| | || || || Sbjct 6885 ACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAG 6944 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 ||||| || || || |||||||| ||||| | || || ||||| || |||| | Sbjct 6945 GATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAAC 7004 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 ||||||| | || || | ||| | |||| | | ||| | ||||||||| Sbjct 7005 GAATTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAATCC 7064 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCG 138747 | ||||| || |||||| |||||||| | || ||| || | |||| ||| || Sbjct 7065 GTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTGCG 7124 Query 138748 TACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAG 138807 || | ||||| |||| || | ||||| ||| || ||||| | ||||| ||| Sbjct 7125 TATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGTAG 7184 Query 138808 TAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATG 138867 || || || ||| || ||||||||||| ||| || |||| || || |||| Sbjct 7185 TAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTCTTCGCTGTCATAGGGCAGA 7244 Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 || | || |||| || || ||||| || || || || | || | || | || | | Sbjct 7245 CGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCCTC 7304 Query 138928 AGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAA 138987 | ||| ||| ||| || || | ||||| ||||| | ||||||| |||||| ||| Sbjct 7305 ATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAA 7364 Query 138988 TTTCGCACGACCACCTTAGTCGTATGCTTT-AATCGTTCAAAATCGTATGTGCCCCCGTT 139046 || ||| || | ||| ||| |||||| | | ||||||||||| || || Sbjct 7365 TTGCGCGTAACAATCTTCGTC-ACTGCTTTGAGTTTCTCAAAATCGTACGT------CTT 7417 Query 139047 GTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCAC 139106 | | | | || || | |||| | ||| || || | |||||||| || | Sbjct 7418 AT------CAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAAT 7471 Query 139107 TTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTAC 139165 || | | || || ||||| |||||||| | |||||||| ||||| || || | Sbjct 7472 CTCATCCTTGGACG-AATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCC 7530 Query 139166 CTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGC 139225 | | ||| || |||||||| || | ||| || ||||||||||| | ||| ||||| || | Sbjct 7531 CAATATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCC 7590 Query 139226 CAGTTTCCACTTGTGTCTCTATAATG 139251 ||||||||||||| ||| || ||| Sbjct 7591 CAGTTTCCACTTGACTCTGAATTATG 7616 >seq186 Length=148488 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| |||||||| || || | Sbjct 13626 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCT 13685 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || ||||| Sbjct 13686 GACACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 13745 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||||||||||||| |||| ||| | | | || || || ||| Sbjct 13746 CAGCGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAAC 13805 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | ||||| || Sbjct 13806 ATCCAGAAGGAGTCAACCCTTCACCTTGTGTTACG 13840 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| || ||||| || || ||||| || ||||| ||| | | Sbjct 13854 ATGCAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCT 13913 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| ||||| || || ||||||||||| ||||| || || Sbjct 13914 GATACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 13973 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| |||||||| || |||||| | | | | || || || ||| Sbjct 13974 CAACGTTTGATTTTTGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCGGACTACAAC 14033 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || | ||| |||| Sbjct 14034 ATCCAGAAGGAATCAACCCTTCATCTTGTGCTGCG 14068 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| || || || || || ||||| ||| | | Sbjct 13172 ATGCAAATTTTTGTCAAAACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAACCATCT 13231 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || || || || || || || || Sbjct 13232 GACACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCAG 13291 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || ||||| |||||| | | | |||| || || ||| Sbjct 13292 CAACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGTCCGACTACAAC 13351 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || | || |||||| Sbjct 13352 ATCCAGAAGGAGTCTACCCTTCATTTGGTCTTACGTCTCCGTGGAGGC 13399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || ||||| || || || ||| | | Sbjct 13400 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACCATTACCCTTGAGGTCGAACCTTCT 13459 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||||| || | ||| | || || || || || || || || || ||| Sbjct 13460 GATACTATTGAAACGTGAAGGCCAAA--TTCAGGATAAGGAGGGGATCCCACCGGACCAA 13517 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||||||||| || || || || ||| | | | |||| || || || Sbjct 13518 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGATGGTCGTACCCTGTCTGACTACAAT 13577 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 13578 ATCCAGAAGGAGTCTACCCTCCATCTTG 13605 >seq18 Length=974545 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || | || || ||| || | Sbjct 449447 ATGCAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAACCCTCA 449506 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||| || ||||| || ||||| ||||| ||||| Sbjct 449507 GATACCATTGAAAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCAG 449566 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||||||||| || ||||| |||||| | | |||| ||||| || Sbjct 449567 CAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGGATTACAAT 449626 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || | |||||||| | || || ||| Sbjct 449627 ATCCAGAAGGAGAGCACCCTGCATCTCGTGTTGCGTCTCCGTGGTGGC 449674 >seq2952 Length=20052 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || || || || | || |||| || |||||||| || | ||| || |||||||| Sbjct 6240 TTTGTCCACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCC 6299 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||||| | || | | ||||||||| | ||| || ||||||||| ||||| | || Sbjct 6300 GGTTTTCAGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGG 6359 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || |||| | ||||| || || |||||||| || || || || ||||| ||| || Sbjct 6360 TTCTGCCACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGC 6419 Query 138333 CATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAAT 138389 ||| | || | | || || |||||||| ||||||||||| || || || || Sbjct 6420 CATCTCGATCATGGTCTTCACCTTGATCTCCCAAACGGTCTTGTAGAGCTCGCGGAT 6476 >seq83690 Length=433 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || ||| | || Sbjct 26 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCC 85 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| |||||||| ||||| || || Sbjct 86 GATACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 145 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || || |||| ||| | | | || || || ||| Sbjct 146 CAGCGTCTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACTCTTTCGGACTACAAC 205 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||||| || || || |||| Sbjct 206 ATTCAAAAGGAATCCACTCTCCATCTTG 233 Score = 102 bits (112), Expect = 7e-17 Identities = 117/156 (75%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || ||||| |||||||| || || | Sbjct 254 ATGCAGATCTTTGTCAAGACCCTTACCGG-AAGACCATTACTCTCGAAGTTGAGCCCTCT 312 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || || ||||| |||||||| ||||| || || Sbjct 313 GACACCATTGAGAATGTCAAGGCTAAAATTCAGGACAAGGAAGGAATCCCTCCAGACCAG 372 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||||||||||||||||| || || || || ||| Sbjct 373 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGAT 408 >seq165 Length=164173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || | ||||| || || | ||||||||| || | Sbjct 30569 ATGCAGATCTTTGTGAAGAC--TTACGGAGAAAACCATCACATTGGAAGTAGAACCCTCA 30512 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | |||| || | |||||| || ||||| || ||||| |||| |||||| Sbjct 30511 ATAACCATTGAAAATGTGATTGCAAAGATTCAGGACAAGGAGGGAATTTCTCCAGATCAA 30452 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-TCGAGAAACATGTCAGATTATAA 24882 || | | ||||||||||||| || ||||| ||||| | | | || | || || || || Sbjct 30451 CAGCATCTGATCTTTGCCGGAAAGCAGCTTAAGGATGGCCATACAC-TCTCGGACTACAA 30393 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || || | |||||||| Sbjct 30392 TATTCAGAAGGAGAGCACCCTCCATCTCGTGTTGCG 30357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449296840487280