Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq83690 136 3e-27 seq186 125 5e-24 seq18 116 2e-21 seq28036 84.2 1e-11 seq165 84.2 1e-11 >seq83690 Length=433 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||| |||||||| |||||||| || | || |||| Sbjct 237 AGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCT 178 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| ||||||||||| || ||||||||| | || | || |||||||| Sbjct 177 TCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 118 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||||| |||| ||| |||||| Sbjct 117 TGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTC 58 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| ||||||||||||||| Sbjct 57 TTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 25 Score = 102 bits (112), Expect = 5e-17 Identities = 133/181 (73%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 34799 TTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGC 34858 || || ||||| || | || |||| || |||||||||||||| ||||||| || ||| Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 34859 TGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATT 34916 |||||| | || | || |||||||| | ||||| ||||| || || || | | Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGAC--ATTCTCAATGGTGT 314 Query 34917 CATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 || || ||| || || | || |||||| |||| || |||||||| ||||||||||||| Sbjct 313 CAGAGGGCTCAACTTCGAGAGTAATGGTC-TTCCGGTAAGGGTCTTGACAAAGATCTGCA 255 Query 34977 T 34977 | Sbjct 254 T 254 >seq186 Length=148488 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||| || || ||||| || ||| | || |||| Sbjct 13609 AGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGACCATCT 13550 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||| ||||||| || || ||||| | || | ||||||||| || Sbjct 13549 TCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTATCC 13490 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||| || ||| | | || | ||| | ||||| |||| ||| |||||| Sbjct 13489 TGAATTTGGCCTTC-ACGTTT-CAATAGTATCAGAAGGTTCGACCTCAAGGGTAATGGTC 13432 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || |||||||| ||||||||||||||| Sbjct 13431 TTTCCGGTAAGGGTCTTGACAAAGATCTGCATG 13399 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| ||||||||||||||| ||||| || ||| | || |||| Sbjct 13156 CAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATC 13097 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| || || || ||||| || ||||||||| | || | |||||||| || Sbjct 13096 TTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATC 13037 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| ||| || |||||| |||| || ||| Sbjct 13036 CTGAATCTTAGCCTTCAC--ATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATG 12979 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||||| |||||||||||||| Sbjct 12978 GTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 12944 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| ||| ||||||||| ||||| ||||| || || | || |||| ||| Sbjct 13834 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCC 13775 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | || || ||||| ||||||| || ||||| ||| | || | || |||||||| | Sbjct 13774 AACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGG 13715 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || |||||| | || | ||| || ||| || || | || ||||||||| Sbjct 13714 ATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTT 13655 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| |||||||||||||| Sbjct 13654 CCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||||| |||| ||| ||||||||| ||||| ||||| || | | |||| |||| || Sbjct 13381 GACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTC 13322 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 || ||||| || ||||| || || |||||||||||| | || | |||||||| || | Sbjct 13321 GAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTG 13262 Query 34888 TATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 || || ||||| || || || | ||| | || || |||| ||| |||||| Sbjct 13261 GATCTTAGCCTTGAC--ATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTC 13204 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| || ||||| || ||||| Sbjct 13203 TTTCCGGTAAGGGTTTTGACAAAAATTTGCAT 13172 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || || |||| ||| |||||||| ||||| |||||||| ||| | || |||| Sbjct 14066 CAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATC 14007 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || || || |||| |||||||||||| | || | || || || || Sbjct 14006 CTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATC 13947 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | ||| | || || || | || || || Sbjct 13946 CTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGT 13887 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| || || || || || || || |||||| Sbjct 13886 CTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 >seq18 Length=974545 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || || || | ||||||||||||||| || || || ||||| || | || |||| || Sbjct 449655 ACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCA 449596 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||||||||| ||||||| || ||||| || | || | ||||||||||| | Sbjct 449595 AGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGA 449536 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| ||| || | | || | || || || || || | ||| ||||| || Sbjct 449535 ATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTC 449476 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| |||||||||||||| Sbjct 449475 CCCGTAAGAGTCTTCACAAAGATCTGCAT 449447 >seq28036 Length=10335 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || || || | ||||||||||||||| || || |||||||| || | || |||| || Sbjct 7701 ACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAGTCCGAGAGTGTACGGCCATCCTCA 7760 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 | |||||||||| |||||||| || ||||| || | || || ||||| ||||| Sbjct 7761 ACCTGCTTTCCGGAAAAGATCAGACGCTGCTGATCCGGAGGAACACCCTCATTGTC 7816 >seq165 Length=164173 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || || || | |||||||||||||||||| || |||||||| || | | |||| | Sbjct 30363 ACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGGCCATCCTTA 30422 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||||||||| |||||||| | || || ||| | | | ||||||||||| | Sbjct 30423 AGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCCTTGTCCTGA 30482 Query 34889 ATTTTTTGTTTGACGGATGCTATCG--ATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || ||| | || | | || | ||| | || || || || | || ||||| | Sbjct 30483 ATCTTTGCAATCACATTTTCAATGGTTATTGA--GGGTTCTACTTCCAATGTGATGGTTT 30540 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| | ||||| |||||||||||||| Sbjct 30541 TCTCCGTAA--GTCTTCACAAAGATCTGCAT 30569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325268766905294