Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq186 156 8e-33 seq18 140 6e-28 seq83690 138 2e-27 seq60870 125 1e-23 seq165 113 9e-20 seq7722 105 1e-17 seq7442 104 5e-17 >seq186 Length=148488 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | || || || ||||| ||||| || || || || || || | | || Sbjct 14069 ACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCC 14010 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || |||||||| |||||||| || | | ||| || |||||||| |||||||| || Sbjct 14009 ATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTT 13950 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| ||||| ||||||||||| |||||| ||||| ||||||| ||| || Sbjct 13949 ATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAAT 13890 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| || || || || || ||||| Sbjct 13889 TGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 152 bits (168), Expect = 1e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | || || ||||| || ||||| || || || ||||| || | | ||| Sbjct 13159 ACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACC 13100 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| || |||||||| || || | || || ||||| || || || ||||| Sbjct 13099 ATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTT 13040 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| || || ||||| |||||||||||| || || || || | ||| || Sbjct 13039 ATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGAT 12980 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| ||||| ||||||||| Sbjct 12979 GGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATT 12943 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| | || | ||| || || || || ||||| || || || ||||| Sbjct 13852 CCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 13793 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| | ||||| || |||||||| | | || |||||||| || Sbjct 13792 AGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGG 13733 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || || ||||| || ||| || || ||| Sbjct 13732 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACT 13673 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| ||||| |||||||| Sbjct 13672 TCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| | || || || || ||||| || ||||| || || || || || Sbjct 13398 CCTCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 13339 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || || || || || ||||| || || || | ||| || ||||| || Sbjct 13338 AAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 13279 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||| ||||| || || ||||| ||||| || ||| ||||| ||| Sbjct 13278 ATACCCTCCTTATCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACT 13219 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || || | || || ||||| || |||||| Sbjct 13218 TCAAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCATT 13171 >seq18 Length=974545 Score = 140 bits (154), Expect = 6e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| ||||| ||||| || || | | || || || || || ||||| |||||| Sbjct 449637 TCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAG 449578 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | | || ||||| ||||| ||||| ||||| || |||||||||||||| |||||| Sbjct 449577 ATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTT 449518 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| ||||| ||||| || ||||| || || || || || || | ||||| ||| Sbjct 449517 TCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACA 449458 Query 82800 AATATCTGCATT 82811 || ||||||||| Sbjct 449457 AAGATCTGCATT 449446 >seq83690 Length=433 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || ||||| ||||| || || || || || || | Sbjct 254 TACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCG 195 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| | ||| |||||||| ||||| || | || || ||||||| Sbjct 194 AAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAG 135 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| || || || || ||||| ||||| |||||| | Sbjct 134 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGA 75 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 74 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Score = 129 bits (142), Expect = 1e-24 Identities = 138/181 (76%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 82630 TATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTT 82689 |||| ||||| || ||| | | ||| ||||| ||||| ||||| |||||||| | | | Sbjct 433 TATTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCT 374 Query 82690 GTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 | || |||||||| ||||||||||| || ||||| || || || ||||| ||||| || | Sbjct 373 GCTGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGT 314 Query 82750 CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || || || ||||| | ||| || ||||| || || | ||||| ||||| ||||||| Sbjct 313 CAGAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCA 255 Query 82810 T 82810 | Sbjct 254 T 254 >seq60870 Length=785 Score = 125 bits (138), Expect = 1e-23 Identities = 123/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||||| || || |||||||| ||||| |||||||| || | | || Sbjct 736 CGAAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCA 677 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| ||| ||||||||||| |||| | ||| |||||||| || || || || ||| Sbjct 676 TCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTA 617 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATT 82753 || |||||||| ||||| |||||||| |||| | ||| Sbjct 616 TCCTGAATCTTGGCTTTAACATTTTC--TCGTTTTATT 581 >seq165 Length=164173 Score = 113 bits (124), Expect = 9e-20 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| ||||| || || || || | || || | || || ||||| |||||| Sbjct 30381 TCCTTCTGAATATTGTAGTCCGAGAGTGTATGGCCATCCTTAAGCTGCTTTCCGGCAAAG 30440 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || ||||||||||||| ||||| ||||| || ||||||||||| | |||||| Sbjct 30441 ATCAGATGCTGTTGATCTGGAGAAATTCCCTCCTTGTCCTGAATCTTTGCAATCACATTT 30500 Query 82740 TCAATCGTATCATTA-GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 ||||| || | | | |||||||||||||| || || || || | || | ||||| || Sbjct 30501 TCAATGGT-TATTGAGGGTTCTACTTCCAATGTGATGGTTTTCTCCGT--AAGTCTTCAC 30557 Query 82799 AAATATCTGCATT 82811 ||| ||||||||| Sbjct 30558 AAAGATCTGCATT 30570 >seq7722 Length=1803 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||||| || || |||||||| ||||| |||||||| || | | || Sbjct 131 CGAAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCA 72 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| ||| ||||||||||| |||| | ||| |||||||| || || || || ||| Sbjct 71 TCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTA 12 Query 82716 TCTTGAATCTT 82726 || |||||||| Sbjct 11 TCCTGAATCTT 1 >seq7442 Length=2102 Score = 104 bits (114), Expect = 5e-17 Identities = 144/203 (71%), Gaps = 13/203 (6%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| || || |||||||| || || |||||||| || | | | ||||||| ||| Sbjct 1828 TGCAGCGTTGACTCTTTCTGAATTTTGTAATCAGAGAGGGTACGTGCATCTTCTAATTGC 1887 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||||||||| |||| | ||| |||||||| || || | | |||||||| Sbjct 1888 TTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGC---------CCTGAATCTTA 1938 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| |||||||| || |||||| ||| || || || || || || || || || || Sbjct 1939 GCTTTAACATTTTCGATGGTATCAGAAGGCTCCACCTCGAAGGTGATTGTTTTTCCCGT- 1997 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 1998 ---GTTTTCACGAAGATTTGCAT 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980483365134014