Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4578 196 5e-45 seq186 141 9e-29 seq83690 104 2e-17 seq18 100 3e-16 seq2952 86.0 6e-12 seq26202 84.2 2e-11 >seq4578 Length=10518 Score = 196 bits (216), Expect = 5e-45 Identities = 482/724 (67%), Gaps = 13/724 (2%) Strand=Plus/Plus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 ||||| || || |||| ||| || ||||| |||| |||| || | ||||| || Sbjct 3558 ACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAAG 3617 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 || || || ||||| | |||||| || || | || || ||||| || ||||||| | Sbjct 3618 GATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAAC 3677 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGC 148445 || || | || ||| | | ||||| ||| || | |||| | ||| | | Sbjct 3678 GAATTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAATCC 3737 Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCG 148505 | ||| || || |||||| |||||||| || || || ||| | || | || || Sbjct 3738 GTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTGCG 3797 Query 148506 TACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAG 148565 |||| ||| ||||| || | | |||| |||||| || ||||| | || || ||| Sbjct 3798 TACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAG 3857 Query 148566 TAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATA 148625 || || |||||| |||||| ||||| | ||| ||||| || || |||| | Sbjct 3858 TAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCCTCTTCGCTATCATAGGGCAGA 3917 Query 148626 CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTA 148685 |||| | | || || || || || ||||| || || | ||||| |||| |||| | Sbjct 3918 CGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTC 3977 Query 148686 ATGTTGGAGAGGCGCGCGCTCTCGAGCGG-ATAGTGGTTGCGGTCGATGATCTTGTCAAG 148744 || ||||| | || |||| | ||| ||||| |||| |||||||| |||| | Sbjct 3978 ATATTGGACAATTTGGC-CTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCAA 4036 Query 148745 ATTGCGCACCACCACCTTTGTAATT-CTGCGCAGCAATTCAAAATCGTACTTGTCATC-- 148801 ||||||| || | ||| || | | || | || ||||| |||||| | | ||| Sbjct 4037 ATTGCGCGTAACAATCTTCGTTACTGCTTTG-AGTTTCTCAAAGTCGTACGTCTTATCAG 4095 Query 148802 ----TACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCG 148857 ||||| ||| || | || ||||| || ||||||||||| || |||||||| Sbjct 4096 CCTTTACGAA-CATA--TTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCT 4152 Query 148858 GGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCT 148917 || || ||||| || || | ||||| |||||| || || || | |||| Sbjct 4153 TGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCT 4212 Query 148918 TTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCA 148977 ||||| ||||| ||||||||||| || ||||||| ||||||||| |||||||||| Sbjct 4213 GCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCA 4272 Query 148978 CCTG 148981 | || Sbjct 4273 CTTG 4276 Score = 179 bits (198), Expect = 4e-40 Identities = 481/727 (66%), Gaps = 19/727 (3%) Strand=Plus/Plus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 ||||| || || |||| ||| || || || |||| |||| || | ||||| || Sbjct 6885 ACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAG 6944 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 || || || ||||| | |||||| || || | || || ||||| || ||||||| | Sbjct 6945 GATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAAC 7004 Query 148386 GAGTTGCGCAAACCGCGATTTTTT---ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGC 148442 || || | || ||| || || ||||| ||| | | |||| | ||| | Sbjct 7005 GAATTCCTCA---CGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAA 7061 Query 148443 GGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCC 148502 || ||| || |||||| ||||||||||| || || ||| | || | || Sbjct 7062 TCCGTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCT 7121 Query 148503 TCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCG 148562 |||| | ||| ||||| || | | |||| |||||| || ||||| | || ||| Sbjct 7122 GCGTATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCG 7181 Query 148563 TAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGC 148622 ||||| || |||||| |||||| ||||| | || ||||| || || ||| Sbjct 7182 TAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTCTTCGCTGTCATAGGGC 7241 Query 148623 ATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGT 148682 | ||||| | | || || || || || ||||| || || | ||||| |||| ||| Sbjct 7242 AGACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGC 7301 Query 148683 TTAATGTTGGAGAGGCGCGCGCTCTCGAGCGG-ATAGTGGTTGCGGTCGATGATCTTGTC 148741 | || ||||| | || |||| | ||| ||||| |||| |||||||| |||| Sbjct 7302 CTCATATTGGACAATTTGGC-CTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTT 7360 Query 148742 AAGATTGCGCACCACCACCTTTGTAATT-CTGCGCAGCAATTCAAAATCGTACTTGTCAT 148800 | ||||||| || | ||| || | | || | || |||||||||||| | | || Sbjct 7361 CAAATTGCGCGTAACAATCTTCGTCACTGCTTTG-AGTTTCTCAAAATCGTACGTCTTAT 7419 Query 148801 C------TACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCAT 148854 | ||||| ||| || | || ||||| || ||||||||||| || |||||| Sbjct 7420 CAGCCTTTACGAA-CATA--TTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCAT 7476 Query 148855 CCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGT 148914 || || || ||||| || || | ||||| |||||| || || || | | Sbjct 7477 CCTTGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATAT 7536 Query 148915 TCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTT 148974 ||| ||||||||||| ||||||||||| || ||||||| ||||||||| ||||||| Sbjct 7537 TCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTT 7596 Query 148975 CCACCTG 148981 |||| || Sbjct 7597 CCACTTG 7603 >seq186 Length=148488 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| ||||| || ||||| ||| || ||| ||| | |||||||| Sbjct 13377 AAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCCTCGAG 13319 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| ||||||| || |||||||| || ||||| || ||||| || ||| Sbjct 13318 CTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGGAT 13259 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||||| ||||| | || || || || | ||||| ||| || || Sbjct 13258 CTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTTCC 13199 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| || ||||| ||||| Sbjct 13198 GGTAAGGGTTTTGACAAAAATTTGCAT 13172 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || | || ||| | || || || | Sbjct 13147 ATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCA-TCTTCAAGTT 13089 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || |||| || ||||||||||| || || ||||| ||||| || |||| Sbjct 13088 GCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCT 13029 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||| || | |||||| || || | |||| ||| || |||| Sbjct 13028 TAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATGGTCTTACCGG 12969 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||| || || || |||||||| Sbjct 12968 TCAAAGTCTTCACAAAGATCTGCAT 12944 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || ||||| ||||||||||| |||||| ||||| | ||||| Sbjct 13750 CGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATA 13691 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||| | |||||| || |||| || | ||| || || || || || || || || ||| Sbjct 13690 GTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATC 13631 Query 133656 TGCAT 133660 ||||| Sbjct 13630 TGCAT 13626 >seq83690 Length=433 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || || ||||||||||| |||||||| ||||||||||| |||| Sbjct 171 TGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATC 112 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| || |||| || || || || | ||||| ||| ||||| Sbjct 111 TTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCA 52 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || || || || || || ||||||||| || Sbjct 51 GTGAGGGTCTTGACAAAGATCTGCATGCCT 22 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || || | || | ||||||||||| |||||||| ||||||||| Sbjct 407 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGAGGGATTCCTTCCTTG 348 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| | ||||| | ||||| ||||| | |||||| || |||| || | Sbjct 347 TC-CTGAATTTTAGCCTTGACATTCTCAATGGTGTCAGAGGGCTCAACTTCGAGAGTAAT 289 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| || || || || || |||||||| Sbjct 288 GGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 >seq18 Length=974545 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGC 133514 ||| | |||| ||| ||||| |||||||||| || | ||| ||| ||||| ||| Sbjct 449650 ATGCAGGGTGCTCTCCTTCTGGATATTGTAAT--CCGACAGTGTACGGCCATCCTCAAGC 449593 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | |||||||| || ||||| || || |||||||| ||| Sbjct 449592 TGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATC 449533 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| || | | |||| || || | ||| ||||| || | ||||| |||||| || Sbjct 449532 TTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCC 449473 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || |||||||| Sbjct 449472 GTAAGAGTCTTCACAAAGATCTGCAT 449447 >seq2952 Length=20052 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCG-CCATGCGT 147996 ||| || |||| |||||||| |||||||| || || || |||||| ||| ||| |||| Sbjct 6267 GGCCGCTGGTTTGGTGCGCAGGTAGTACATTCCGGTTTTCAGGCCC-TGCTTCCAGGCGT 6325 Query 147997 AGTCGTGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACG 148053 || ||| | || | |||| || || | || | | ||| | | || || | Sbjct 6326 AGAAGTGGATGGAAG---TGAGTTTGCCGTAATTGGGTTCTGCCACGTAAATGTTGAATG 6382 Query 148054 ACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCT 148113 |||| ||||||||||| || || || |||||||| ||||| || || | ||| | || Sbjct 6383 ACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCCATCTCGATCATGGTCTTCACCT 6442 Query 148114 TCATCTCCCAGGCCGTCTTGTACAGC 148139 | |||||||| | |||||||| ||| Sbjct 6443 TGATCTCCCAAACGGTCTTGTAGAGC 6468 >seq26202 Length=13276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 120643 CACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGG 120702 || |||||||| ||||| || || ||||| || ||||||||||| || || || Sbjct 1457 CAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTGAGT 1398 Query 120703 CCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAAC 120762 |||||||||||||| | |||| |||| || | || ||||| || |||||| Sbjct 1397 CCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAGAAA 1338 Query 120763 ACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGTC 120821 | |||||| || |||||||| | || || || |||| || | || || ||| | Sbjct 1337 ATGCCCTCAACAGCTGCAAAGGCAATCACACGTTC-CCCAAAGTTAGCTTCCTGACTGGC 1279 Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTT 120851 ||||||| || ||||| || ||||| || Sbjct 1278 AATCCACTGCAGAGCCCAATCTGCCTTCTT 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482775276120240