Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq35959 86.0 1e-11 >seq35959 Length=4883 Score = 86.0 bits (94), Expect = 1e-11 Identities = 203/299 (68%), Gaps = 12/299 (4%) Strand=Plus/Minus Query 279356 CGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGA 279415 || ||||| || |||| || ||||||| || ||| ||||||| || ||||| ||| Sbjct 2487 CGTTATGGCAAGGTTATGATAATGACAGATCAGGATCAAGATGGATCCCATATTAAGGGA 2428 Query 279416 TTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTT--GAATCAAAATTTTGTAA 279473 ||| | | |||| | |||| |||||||||||| | || | | ||||| Sbjct 2427 TTATTGATCAATTTTATCCATACAAATTGGCCAGAATTGCTACGATTGCCATTTTTG--- 2371 Query 279474 GTGTGTTTCA-AACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGTATTTTAT 279532 | | |||| || |||||| | |||||||| ||| | | ||||| | | ||| ||| Sbjct 2370 GAGGAATTCATTACGCCAATTGTCAAGGCAACGAAACGGGATGAAGAACATGCATTCTAT 2311 Query 279533 TCATTG-CAGAAGTTTGAACAATGGAAAGATTCAGTTGAGAAT--TCAGCCTCATTCCAT 279589 || ||| ||||| |||||| ||||||||| || | ||| ||| || || || Sbjct 2310 TCGTTGCCAGAA-TTTGAAGAATGGAAAGCCGCAACTCCCAATGCTCATACTTAT--AAT 2254 Query 279590 ACCAAGTATTTTAAAGGTTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATTTTAA 279648 | ||||| | |||||||| | || || | | ||||| ||||| |||||||| || Sbjct 2253 ATAAAGTACTACAAAGGTTTGGGTACTTCTACGTCCAAGGAGGCAAAGGAATATTTCAA 2195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185188399677786