Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq186 102 2e-16 seq18 91.5 3e-13 seq83690 87.8 4e-12 >seq186 Length=148488 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| ||||| || || ||| | ||||| || |||||| Sbjct 13629 CAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCTGAC 13688 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || |||||||| || || || Sbjct 13689 ACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAG 13748 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||| || |||||||||||||| | ||| | | || |||||| || Sbjct 13749 CGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAACATC 13808 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||||| ||||| || ||||||||||| || Sbjct 13809 CAGAAGGAGTCAACCCTTCACCTTGTGTT 13837 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || || ||| ||||||| ||| ||||| ||| | ||| Sbjct 13869 AAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCTGATACAATTGAAAAT 13928 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || ||| ||| | | || || Sbjct 13929 GTCAAAGCCAA-GATTCAGGATAAAGAAGGAATTCCTCCAGACCAGCAACGTTTGATTTT 13987 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || | || ||||| | || | | || |||||| ||||||| || || Sbjct 13988 TGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCGGACTACAACATCCAGAAGGAATC 14047 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| || | ||||| Sbjct 14048 AACCCTTCATCTTGTGCTGCGTCTTCG 14074 >seq18 Length=974545 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || ||||| ||||| ||||| |||||| Sbjct 449444 AAAATG---CAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAA 449500 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 || || || | ||| || |||||||| |||||| || || || |||||| || Sbjct 449501 CCCTCAGATACCATTGAAAATGTGAAAGCAAA-GATTCAGGACAAGGAGGGAATTCCTCC 449559 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 ||| || | | ||||| |||||||||||| | || ||||| | || || | || Sbjct 449560 GGATCAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGGA 449619 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||||| ||| || || || || || ||| | || || Sbjct 449620 TTACAATATCCAGAAGGAGAGCACCCTGCATCTCGTGTTGCGTCTCCG 449667 >seq83690 Length=433 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | || || ||| ||| || Sbjct 29 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCCGAT 88 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || |||||||| || ||| || Sbjct 89 ACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAGCAG 148 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| |||||||| ||||||||||| | ||| | | || |||||| | Sbjct 149 CGTCTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACTCTTTCGGACTACAACATT 208 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || ||||| || ||||| Sbjct 209 CAAAAGGAATCCACTCTCCATCTTGT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180203232268746