Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4578 138 1e-27 seq186 96.9 3e-15 seq2952 89.7 5e-13 >seq4578 Length=10518 Score = 138 bits (152), Expect = 1e-27 Identities = 449/687 (65%), Gaps = 23/687 (3%) Strand=Plus/Plus Query 146944 GTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATG 147003 ||| | || || || || ||||||||||||| || |||||||| | || || ||||| Sbjct 6930 GTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATT 6989 Query 147004 TACGCCACCAACAATGAATTTCGCAGACCGTACGCACGG--ATGTTGTCCTTCAAAGTTT 147061 || |||| ||| ||||| | || || | | || || || |||| || | Sbjct 6990 GGGGCAACCAGCAACGAATTCCTCACGCCAT--GTTGGGCAATTTTTGCCTTTAACTCAT 7047 Query 147062 GCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGAC 147121 ||| | ||||| || || || |||||| |||||||| || | || | Sbjct 7048 CCCAATTCCACAAATCCGTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGC 7107 Query 147122 TGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTG 147181 | | |||| || ||| | || |||| ||| || |||||||| || |||| Sbjct 7108 TCACTGGACATCCTGCGTATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTG 7167 Query 147182 CCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTT 147241 |||| | || || ||||| ||||| ||| |||||| | || || | ||||||| Sbjct 7168 CCTCCAAGGCACCGTAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTCTT 7227 Query 147242 CGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGC 147301 |||| || || |||| ||||| | | || ||||| |||| |||||| | || | | Sbjct 7228 CGCTGTCATAGGGCAGACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCC 7287 Query 147302 CGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGA 147360 | || || | ||| | ||| || || ||| | || |||||||| |||| Sbjct 7288 CAATTGGCCTGTGCCTCATATTGGACAATTTGGC-CTCTGGTACGGGATAGTAGTTGATG 7346 Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420 || || | ||||| | || ||| |||| || || | || |||||||||||| ||| Sbjct 7347 TCGATGACTTTGTTCAAATTGCGCGTAACAATCTTCGTCACTGCTTTGAGTTTCTCAAAA 7406 Query 147421 TCATAAGTC----CCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATT 147476 || || ||| | | ||| ||| || |||| | || ||||| |||||||| Sbjct 7407 TCGTACGTCTTATCAGCCTTT---ACGAACATATTG----AGAGCAATAGATGCCAGATT 7459 Query 147477 GCAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTG 147534 ||| || || |||| || | | | | || | || ||||| | ||||| ||||| Sbjct 7460 GCACACAGCAATCTCATC--CTTGGACGAATATTCTACAATTTCTGTGCACAAATTGCTA 7517 Query 147535 CATTTTATGACTCCCAA-ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAG 147593 || || |||||| ||| ||||||||||| |||| |||||||| |||||| | | Sbjct 7518 CAGCGAATTG-TCCCAATATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAA 7576 Query 147594 CATGTACGGTCCGCCGGTCTCGACTTG 147620 ||||||||| || || || ||||| Sbjct 7577 CATGTACGGCGTCCCAGTTTCCACTTG 7603 Score = 129 bits (142), Expect = 6e-25 Identities = 447/687 (65%), Gaps = 23/687 (3%) Strand=Plus/Plus Query 146944 GTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATG 147003 ||| | || || || || ||||||||||||| || |||||||| | || || ||||| Sbjct 3603 GTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATT 3662 Query 147004 TACGCCACCAACAATGAATTTCGCAGACCGTACGCACGG--ATGTTGTCCTTCAAAGTTT 147061 || |||| ||| ||||| | || ||| | | || || || |||| | | Sbjct 3663 GGGGCAACCAGCAACGAATTCCTCACACCAT--GTTGGGCAATTTTTGCCTTTAGCTCAT 3720 Query 147062 GCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGAC 147121 ||| | ||||| || || || || |||||| |||||||| || | || | Sbjct 3721 CCCAATTCCACAAATCCGTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGC 3780 Query 147122 TGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTG 147181 | | |||| || ||| |||| |||| ||| || |||||||| || || | Sbjct 3781 TCACTGGACATCCTGCGTACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGG 3840 Query 147182 CCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTT 147241 |||| | || |||||||| ||||| ||| |||||| | || || | || |||| Sbjct 3841 CCTCCAAGGCACCATAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCCTCTT 3900 Query 147242 CGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGC 147301 |||| || || |||| ||||| | | || ||||| || | |||||| | || | | Sbjct 3901 CGCTATCATAGGGCAGACGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCC 3960 Query 147302 CGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCG-CTCGCTATGGGATAGTGGTTGCGA 147360 | || || | || | ||| || || || || | |||||||| |||| Sbjct 3961 CAATTGGCCTGTGTCTCATATTGGACAATTTGGCCTCTGGC-ACGGGATAGTAGTTGATG 4019 Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420 || || | ||||| | || ||| |||| || |||| || |||||||||||| || Sbjct 4020 TCGATGACTTTGTTCAAATTGCGCGTAACAATCTTCGTTACTGCTTTGAGTTTCTCAAAG 4079 Query 147421 TCATAAGTC----CCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATT 147476 || || ||| | | ||| ||| || |||| | || ||||| |||||||| Sbjct 4080 TCGTACGTCTTATCAGCCTT---TACGAACATATTG----AGAGCAATAGATGCCAGATT 4132 Query 147477 GCAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTG 147534 ||| || || |||| || | | | | || | || ||||| | ||||| ||||| Sbjct 4133 GCACACAGCAATCTCATC--CTTGGACGAATATTCTACAATTTCTGTGCACAAATTGCTA 4190 Query 147535 CATTTTATGACTCCCAA-ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAG 147593 || || |||||| ||| |||||||| || |||| |||||||| |||||| | | Sbjct 4191 CAGCGAAT-TGTCCCAATATTCTGCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAA 4249 Query 147594 CATGTACGGTCCGCCGGTCTCGACTTG 147620 ||||||||| || || || ||||| Sbjct 4250 CATGTACGGCGTCCCAGTTTCCACTTG 4276 >seq186 Length=148488 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | |||| || || || ||||||||||| | |||||| | Sbjct 14068 CGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCA 14009 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || || ||||| || | | | || | ||| || || |||||||| || ||||||||| Sbjct 14008 TCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTA 13949 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | ||||| | || || ||||| | || | Sbjct 13948 TCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATT 13889 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||||||||| | |||||| |||||| Sbjct 13888 GTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | | ||||| || |||||||||||||| | |||||| | Sbjct 13158 CGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCA 13099 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | | || |||||||| || ||||| || ||||| || ||| Sbjct 13098 TCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTA 13039 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | ||||| | ||||| || || | || | Sbjct 13038 TCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATG 12979 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| |||| ||| || | || |||||||| Sbjct 12978 GTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 12944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || ||||||||||| | ||||| |||||| | |||||| |||| Sbjct 13821 TTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAACTGTTTCCCGG 13762 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | |||||| |||||||| || || ||||| || || || || || | Sbjct 13761 CAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA 13702 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||| || | ||||| ||||||| || | || || ||||| || || | Sbjct 13701 CGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCT 13642 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 13641 TGACAAAGATCTGCAT 13626 >seq2952 Length=20052 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 || |||||||| || | ||||| ||||| ||||||| || ||||| || ||||| Sbjct 6247 ACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCCGGTTTTC 6306 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 ||||| ||| | || ||| || ||||| | || |||| | || || ||| Sbjct 6307 AGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGGTTCTGCC 6366 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 ||| ||| || || || || || || || || || || ||||| ||||||||||| Sbjct 6367 ACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCCATCTCG 6426 Query 146731 ATCATGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGC 146772 |||||| || ||| || |||||| |||| ||||| ||| Sbjct 6427 ATCATGGTCTTCACCTTGATCTCCCAAACGGTCTTGTAGAGC 6468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475974769149360