Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5119 100 4e-15 seq2952 100 4e-15 seq14 91.5 2e-12 seq57024 87.8 3e-11 >seq5119 Length=8184 Score = 100 bits (110), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||||| |||||||| || || || ||| |||| | | ||| || Sbjct 5753 ATCTACAAAGTGCTGAAGCAGGTCCATCCTGACAC---TGG--CATCAGC-AGCAAAGCC 5806 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || || ||||| |||| ||||| | | ||||| | Sbjct 5807 ATGAGCATCATGAACAGCTTCGTGAATGACATCTTCGAGCGCATTGCTGCAGAGGCTTCT 5866 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | |||||||||| || ||| | |||||||||||||| |||||| Sbjct 5867 CGTCTGGCCCATTACAACAAGCGCTCGACCATCACGAGTCGCGAGATCCAGACTGCCGTG 5926 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| || |||||| ||||||||| || ||||||| Sbjct 5927 CGTCTCCTGCTGCCCGGAGAGTTGGCCAAGCACGCCGTGAGTGAAGGCACCA 5978 >seq2952 Length=20052 Score = 100 bits (110), Expect = 4e-15 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 263185 CTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATT---GATATGGCGGCCGAC 263241 |||| ||||||||| |||||| | ||| | |||||| || |||||||| ||| Sbjct 6467 CTCTACAAGACCGTTTGGGAGAT---CAAGGTGAAGACCATGATCGAGATGGCGGCTGAC 6411 Query 263242 CGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGACGGCC 263301 || | ||| | | |||||||| ||||| ||||| | ||| | || || || | | Sbjct 6410 CGAGGAGCCTTTATTGACCAGAGTCAGTCATTCAACATTTACGTGGCAGAACCCAATTAC 6351 Query 263302 GAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTAC 263361 | | |||| || || ||| ||| || ||| | ||||| || || || |||||| Sbjct 6350 GGCAAACTCACTTCCATCCACTTCTACGCCTGGAAGCAGGGCCTGAAAACCGGAATGTAC 6291 Query 263362 TATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 || ||||||||| || || ||||| || |||||||||||||| || Sbjct 6290 TACCTGCGCACCAAACCAGCGGCCAATGCAATTCAATTCACCGTGGA 6244 >seq14 Length=1125534 Score = 91.5 bits (100), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||||| ||||| || || || || ||| |||| | | ||| || Sbjct 774063 ATCTACAAAGTGCTGAAGCAAGTCCATCCTGACAC---TGG--CATCAGC-AGCAAAGCC 774010 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || || || || | || ||||| | | ||||| | Sbjct 774009 ATGAGTATCATGAACAGCTTCGTGAATGATATTTTTGAGCGCATTGCTGCAGAGGCTTCT 773950 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | |||||||||| || ||| | |||||||||||||| |||||| Sbjct 773949 CGTCTGGCCCATTACAACAAGCGCTCGACCATCACGAGTCGCGAGATCCAGACTGCCGTG 773890 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| ||| |||||| ||||||||| || ||||||| Sbjct 773889 CGTCTCCTGCTGCCCGGTGAATTGGCCAAGCACGCCGTGAGTGAAGGCACCA 773838 >seq57024 Length=3436 Score = 87.8 bits (96), Expect = 3e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||||| |||||||| || || || ||| |||| | | ||| || Sbjct 1759 ATCTACAAAGTGCTGAAGCAGGTCCATCCTGACAC---TGG--CATCAGC-AGCAAAGCC 1812 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || || ||||| |||| ||||| | | ||||| | Sbjct 1813 ATGAGTATCATGAACAGCTTCGTGAATGACATTTTCGAGCGCATTGCTGCAGAGGCTTCT 1872 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | | |||||| ||| || ||| | |||||||||||||| || ||| Sbjct 1873 CGTTTGGCCCATTACAACAAACGCTCGACCATCACGAGTCGCGAGATCCAGACTGCTGTG 1932 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGT 725128 || || | ||| ||| ||| |||||| ||||||||| Sbjct 1933 CGTCTCCTGCTGCCCGGAGAATTGGCCAAGCACGCCGT 1970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7167507635953812