Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq186 150 2e-31 seq4578 123 3e-23 seq18 113 5e-20 seq50610 93.3 4e-14 seq83690 87.8 2e-12 >seq186 Length=148488 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| || || || || |||||||| || ||||||||||| || ||| | Sbjct 14071 AGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 14012 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || ||||| || |||||||||||||| ||||| || || || || |||||| Sbjct 14011 CCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCT 13952 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | ||| || || | ||| || || |||||| Sbjct 13951 TTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTA 13892 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||||||||||||||||||||| Sbjct 13891 ATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| ||||| || || || || || || ||||| |||||||||||||| Sbjct 13172 TTCCACCACGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 13113 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| || || || || || ||||| |||||||||| ||||||||| || || | Sbjct 13112 AAAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGG 13053 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || || ||||| || || || || | || || || | || | Sbjct 13052 GAATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGA 12993 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| |||||||| ||||| || || || || |||||| Sbjct 12992 CCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATT 12943 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || || || | || || || || ||||| || |||||||||||| Sbjct 13398 CCTCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 13339 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || |||||||| ||||| || ||||| | ||| ||||| || || || Sbjct 13338 AAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 13279 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| || | ||||| || | ||| || Sbjct 13278 ATACCCTCCTTATCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACT 13219 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || ||||| | ||||| || |||||||||||| Sbjct 13218 TCAAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCATT 13171 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || ||||| ||||| || || || ||||| || ||||||||||| Sbjct 13852 CCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 13793 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | |||||| || ||||| ||||||||||||||||| || || Sbjct 13792 AGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGG 13733 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| || | ||||| || | || || Sbjct 13732 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACT 13673 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||||||| || || || | || || || || || ||||| Sbjct 13672 TCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 >seq4578 Length=10518 Score = 123 bits (136), Expect = 3e-23 Identities = 470/721 (65%), Gaps = 35/721 (5%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| || | ||||| ||||| || | |||||||||| |||||||||| || ||| Sbjct 7618 GCCATAATTCAGAGTCAAGTGGAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGC 7559 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| || |||||||| || | || || ||| | || |||||| ||||| | ||| Sbjct 7558 AACAGGAAGAGCAATCAGCAGAATATTGGGACAATTCGCTGTAGCAATTTGTGCACAGAA 7499 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTG---GCCGTTTGCAATCTAGCGTCGGTGTGT 8409 |||||| | || || || | || | | || || |||||||| || || | | Sbjct 7498 ATTGTAGAATATT---CGTCCAAGGATGAGATTGCTGTGTGCAATCTGGCATCTATTGCT 7442 Query 8410 TTAAACGCGTTCGTTGATCGACGCTCA-AACACTTACGACTTTGAACAATTGAAAAACGC 8468 | || |||||| | ||| | || || ||||| ||||| || | ||| || Sbjct 7441 CTCAATATGTTCGTAAAG----GCTGATAAGACGTACGATTTTGAGAAACTCAAA---GC 7389 Query 8469 CGTGC--AAG----TGACGGTACGCAATTTAGATCGCA-TCATTGATGTCAATTTTTATC 8521 ||| ||| | ||| |||||||| || | | |||| || |||| | |||| Sbjct 7388 AGTGACGAAGATTGTTACG---CGCAATTT-GAACAAAGTCATCGACATCAACTACTATC 7333 Query 8522 CCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAG 8581 || | ||| || | || || ||| | ||||| || |||| | || || || | Sbjct 7332 CCGTACCAGAGGCCAAATTGTCCAATATGAGGCACAGGCCAATTGGGATTGGGGTTCAGG 7273 Query 8582 GTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGC 8641 ||||||| || || || || |||| || ||||| || ||| ||||||| | | Sbjct 7272 GTCTGGCGGATGCTTTCATTTTGATGCGTCTGCCCTATGACAGCGAAGAAGCCAAGAAAC 7213 Query 8642 TCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTG 8701 |||| |||| || || | || ||||| || || || || || || || ||| Sbjct 7212 TCAATCAGCAAATCTTCGAGACCATCTACTACGGTGCCTTGGAGGCAAGTTGCGAA-TTG 7154 Query 8702 CCCGAGAA--TTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATT 8759 | ||||| |||| | | ||||| | ||||| || | || | ||| || || | Sbjct 7153 GCTGAGAAGCTTGGACCC-TACGAGACATACGCAGGATGTCCAGTGAGCAAGGGTATCCT 7095 Query 8760 GCAATACGACATGTGG--AATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAA 8817 ||| ||||| |||||| || | || | || ||||||||||||| || || ||| Sbjct 7094 GCAGTACGAAATGTGGGGAAAGAAAC--CAACGGATTTGTGGAATTGGGATGAGTT-AAA 7038 Query 8818 CGC-AAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGC 8876 || |||||||| ||| || || | |||||| || |||| || ||||| || || Sbjct 7037 GGCAAAAATTGCCCAACATGGCGTGAGGAATTCGTTGCTGGTTGCCCCAATGCCAACAGC 6978 Query 8877 CACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTA 8936 | || || || || | || || || |||||||| || || | ||| |||| |||| Sbjct 6977 TTCAACGGCCCAGATTCTAGGCAATAATGAATCCTTCGAACCCTACACATCCAACATGTA 6918 Query 8937 C 8937 | Sbjct 6917 C 6917 Score = 118 bits (130), Expect = 1e-21 Identities = 465/718 (65%), Gaps = 29/718 (4%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| || | ||||| ||||| || | |||||||||| |||||||||| || ||| Sbjct 4291 GCCATAATTCAGAGTCAAGTGGAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGC 4232 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| || || ||||| || | || || ||| | || |||||| ||||| | ||| Sbjct 4231 AACAGGAAGAGTAATCAGCAGAATATTGGGACAATTCGCTGTAGCAATTTGTGCACAGAA 4172 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTG---GCCGTTTGCAATCTAGCGTCGGTGTGT 8409 |||||| | || || || | || | | || || |||||||| || || | | Sbjct 4171 ATTGTAGAATATT---CGTCCAAGGATGAGATTGCTGTGTGCAATCTGGCATCTATTGCT 4115 Query 8410 TTAAACGCGTTCGTTGATCGACGCTCA-AACACTTACGACTTTGAACAATTGAAA----- 8463 | || |||||| | ||| | || || ||||||||||| || | ||| Sbjct 4114 CTCAATATGTTCGTAAAG----GCTGATAAGACGTACGACTTTGAGAAACTCAAAGCAGT 4059 Query 8464 AACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCA-TCATTGATGTCAATTTTTATCC 8522 |||| | || ||| |||||||| || | | |||| || |||| | ||||| Sbjct 4058 AACGAAGATT--GTTACG---CGCAATTT-GAACAAAGTCATCGACATCAACTACTATCC 4005 Query 8523 CTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGG 8582 | || ||| || | || || ||| | ||||| || |||| | || || || || Sbjct 4004 CGTGCCAGAGGCCAAATTGTCCAATATGAGACACAGGCCAATTGGGATTGGGGTTCAGGG 3945 Query 8583 TCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCT 8642 ||| || || || || || |||| || ||||| || ||| |||| || | || Sbjct 3944 TCTAGCGGATGCTTTCATTTTGATGCGTCTGCCCTATGATAGCGAAGAGGCCAAGAAACT 3885 Query 8643 CAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGC 8702 ||| |||| || || | || || || || || || ||||| || || ||| Sbjct 3884 CAATCAGCAAATCTTCGAGACCATCTACTATGGTGCCTTGGAGGCCAGTTGCGAA-TTGG 3826 Query 8703 CCGAGAA--TTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTG 8760 | ||||| |||| | | ||||| ||||||| || | || | ||| || || | Sbjct 3825 CTGAGAAGCTTGGACCC-TACGAGACGTACGCAGGATGTCCAGTGAGCAAGGGTATCCTT 3767 Query 8761 CAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGC 8820 || ||||| |||||| | | || || ||||||||||||| || | ||| || Sbjct 3766 CAGTACGAGATGTGGGACAAGAAACCAACGGATTTGTGGAATTGGGATGAGCT-AAAGGC 3708 Query 8821 -AAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCAC 8879 |||||||| ||| ||| || | |||||| || |||| || ||||| || || | Sbjct 3707 AAAAATTGCCCAACATGGTGTGAGGAATTCGTTGCTGGTTGCCCCAATGCCAACAGCTTC 3648 Query 8880 GACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || || || || | || || || |||||||| || || | ||| |||| ||||| Sbjct 3647 AACGGCCCAGATTCTAGGCAATAATGAATCCTTCGAACCCTACACATCCAACATGTAC 3590 >seq18 Length=974545 Score = 113 bits (124), Expect = 5e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| ||||||||||| || || ||| ||||| || || ||||| || | Sbjct 449673 CCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATC--CG 449616 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || || ||||| || || ||||| ||||||||||||||||| || | Sbjct 449615 ACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAG 449556 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || ||||| ||| ||| || || | || || || | ||||| Sbjct 449555 GAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCA 449496 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || | || |||||||| || || | ||| || || || || ||||||||| Sbjct 449495 CCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTTG 449443 >seq50610 Length=1578 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 7563 TCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTT 7622 ||| ||||||||| |||| || | ||||| |||||||| || ||||| || || || | Sbjct 1113 TCAGCACATGCTGATGCGTGTTTCCGTGGGAATTCACGGAGAGGACATCGATGCAGCTAT 1172 Query 7623 GGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGC 7682 || |||||| | || | || ||| | || || || || ||||| || | || || Sbjct 1173 TGAGACGTACAATCTGCTCTCGCAGAAGTACTTCACTCATGCCTCGCCGACTCTCTTCGC 1232 Query 7683 CGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || | ||| | |||||||||||| || || ||| | || ||||| ||| ||||| Sbjct 1233 AGCAGCCACGCCAGTGCCTCAATTGTCTTCCTGCTTTCTCCTCTCCATGGCCGAGGACAG 1292 Query 7743 CATCGACGG 7751 |||||| || Sbjct 1293 CATCGAAGG 1301 >seq83690 Length=433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || || || || || ||||| |||||||||||||| || || || || ||||| || Sbjct 407 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGAGGGATTCCTTCCTTG 348 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || |||||||| ||||| || | ||||| || | || || |||||||||||| Sbjct 347 TCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCAGAGGGCTCAACTTCGAGAGTAATG 288 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| | || || || || || ||||| Sbjct 287 GTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || |||||||||||||||||||||||||| | Sbjct 252 CCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAA 193 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || || |||| ||||||||| || || || Sbjct 192 AGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 133 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| || | || ||||| | ||| || Sbjct 132 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACC 73 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 72 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504723528881520