Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4578 291 1e-73 seq26202 219 6e-52 seq2745 210 3e-49 >seq4578 Length=10518 Score = 291 bits (322), Expect = 1e-73 Identities = 817/1232 (66%), Gaps = 33/1232 (3%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || | |||| || |||| || || || || ||||| | ||| Sbjct 6888 TGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAGGAT 6947 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || ||||| || || ||||| || |||||||| || || |||| || | Sbjct 6948 TCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAACGAA 7007 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || || | |||||| ||||| | |||| | | ||||| ||| | ||| | | Sbjct 7008 TTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAATCCGTT 7067 Query 68899 GGTACAACATTCCAAAGAT--CGTATTGTAGAATTCCGTTACTTGCATATGATCCATTAT 68956 ||| | |||| | || |||| || || || || || || | |||| | Sbjct 7068 GGTTT--CTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTGCGT 7125 Query 68957 ATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAAT 69016 |||| || || ||||| || ||||| | ||| ||||||||||| || |||||||| | Sbjct 7126 ATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGTAGT 7185 Query 69017 AAATTGTTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 | || || ||||| || | || |||||| ||||| |||||| || || | || | Sbjct 7186 AGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCTTCTTCGCTGTCATAGGGCAGA 7244 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | | ||| || ||||| |||| |||||||||||||| || || || || || ||| Sbjct 7245 CGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCCTC 7304 Query 69136 TTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 |||| || || || ||||| | ||||| || || || || || | ||| || | | Sbjct 7305 ATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAA 7364 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----CATC 69251 || || || | || ||| | || ||||| |||||| | |||| || | Sbjct 7365 TTGCGCGTAACAATCTTCGTCACTGCTTTGAGTTTCTCAAAATCGTA-CGTCTTATCAGC 7423 Query 69252 TATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT--TAGAA 69309 | || |||||||| || || | |||||| ||||| || || || | ||||| | | | Sbjct 7424 CTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGA 7483 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | ||||| || || ||||| || | ||| ||||| || ||||| | ||| ||| Sbjct 7484 --CGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGC 7541 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 ||||| ||||| |||| || || || ||||| | || |||| || |||||||| | Sbjct 7542 TGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCACT 7601 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTG-TAACGCTT 69488 ||| | || || | ||| | | || ||| ||| || || || || Sbjct 7602 TGACTCTGAATTATGGCAAACCAGAGATCTCTCGCAGGAATT---CTCCTGATATACCTA 7658 Query 69489 C--TCTTTTTCATA--TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | || || ||||| | |||| | | | || ||||| || ||||| |||| || Sbjct 7659 CCTTCCTTCTCATACTTCATGTACA-ATTCATT-GAATTTCTCACCCCAGCAATCAAACA 7716 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 |||| |||| | ||| ||||||||||| ||| | |||| || |||| | || Sbjct 7717 ATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCA 7776 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTC-TATTTTCTTCATT 69662 |||| ||||| || ||||| ||||| ||| || ||||| || | || | ||| || || Sbjct 7777 TAAACAGATCCGGGATCCACAGAGC-ATAGAACAGATCCCTTGCTCGTGCCTTC-TCCTT 7834 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 || ||||| || || ||||| | |||||| | || ||| ||||| || || || || Sbjct 7835 GCCCGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAGGTA 7894 Query 69723 TATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATT 69782 || || | | | || || || || || || |||||||| | ||| | ||| || | || Sbjct 7895 GATAGCAAAGGCACCGGGACGCTTGTTCCCACCCTGATCAACGTAGCAGGCTGTTGTGTT 7954 Query 69783 ATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACT 69842 ||||| | ||||| || | || ||||| || | ||||| || || | ||||| ||| Sbjct 7955 GTAGACACGAAGCATTGGGACAAGGCCATTGGAGGTGCCATTGGTGCCGGCAATATGACT 8014 Query 69843 TCCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || ||||| | | | ||| | || |||||||| || || ||||| Sbjct 8015 GCCCCGAGCACGAATGCAGTGC--ATATTCACGCCAATTCCTCCGGCAGCCTTTGAGATC 8072 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACC 69932 |||||||| | |||| || || || || || Sbjct 8073 AGAGCACATTGCTTCAGGGTATCGTAGATTCC 8104 Score = 246 bits (272), Expect = 4e-60 Identities = 722/1094 (66%), Gaps = 25/1094 (2%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || | |||| || |||| || || || || ||||| | ||| Sbjct 3561 TGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAAGGAT 3620 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || ||||| || || ||||| || |||||||| || || |||| || | Sbjct 3621 TCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAACGAA 3680 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || || | ||||||| ||||| | ||||| | | ||||| ||| | ||| | | Sbjct 3681 TTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAATCCGTT 3740 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 ||| | ||| | ||||| || || || || || || | |||| || Sbjct 3741 GGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTGCGTAC 3800 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || ||||| || ||||| | ||| ||||| ||||| || ||||| || || Sbjct 3801 GTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAGTAG 3860 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATG 69077 || || ||||| || | || |||||| | |||| || ||| ||||| | || | | Sbjct 3861 ATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCCTCTTCGCTATCATAGGGCAGACG 3919 Query 69078 TAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137 | | ||| || ||||| || | |||||||||||||| || || || || |||||| | Sbjct 3920 CATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTCAT 3979 Query 69138 ATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| || || || ||||| | ||||| || || || || || | ||| || | ||| Sbjct 3980 ATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATT 4039 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----CATCTA 69253 || || | || || | || ||||| ||| || | |||| || | Sbjct 4040 GCGCGTAACAATCTTCGTTACTGCTTTGAGTTTCTCAAAGTCGTA-CGTCTTATCAGCCT 4098 Query 69254 TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT--TAGAATT 69311 | || |||||||| || || | |||||| ||||| || || || | ||||| | | | Sbjct 4099 TTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGA-- 4156 Query 69312 TGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTG 69371 | ||||| || || ||||| || | ||| ||||| || ||||| | ||| ||||| Sbjct 4157 CGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTG 4216 Query 69372 ATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTG 69431 ||||||||| |||| || || || ||||| | || |||| || |||||||| | || Sbjct 4217 ATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCACTTG 4276 Query 69432 AGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTG-TAACGCTTC- 69489 | | || || | ||| | |||| ||| ||| || || || || | Sbjct 4277 ACTCTGAATTATGGCAAACCAGAGATCCCTCGCAGGAATT---CTCCTGATATACCTACC 4333 Query 69490 -TCTTTTTCATA--TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 || || ||||| | |||| | | | || ||| | || ||||| |||| ||| Sbjct 4334 TTCCTTCTCATACTTCATGTACA-ATTCATT-GAACTTCTCACCCCAGCAATCAAATAAT 4391 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || |||| | ||| ||||||||||| ||| | |||| || |||| | |||| Sbjct 4392 CCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCATA 4451 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTC-TATTTTCTTCATTTC 69664 || ||||| || ||||| ||||| ||| || ||||| || | || | ||| || || | Sbjct 4452 AACAGATCCGGGATCCACAGAGC-ATAGAACAGATCCCTTGCTCGTGCCTTC-TCCTTGC 4509 Query 69665 CTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 69724 | || || || || ||||| | |||||| | ||| ||| ||||| || || || || | Sbjct 4510 CCGTGTTCTTCTTGAGATCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCCAGGTAGA 4569 Query 69725 TCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTAT 69784 | || | | | || || || || || || || ||||| | ||| | ||| || | || | Sbjct 4570 TAGCAAAGGCACCGGGACGCTTGTTCCCACCTTGATCAACGTAGCAGGCTGTCGTGTTGT 4629 Query 69785 AGACTCTCAGCATC 69798 |||| | |||||| Sbjct 4630 AGACACGAAGCATC 4643 >seq26202 Length=13276 Score = 219 bits (242), Expect = 6e-52 Identities = 422/620 (68%), Gaps = 3/620 (0%) Strand=Plus/Minus Query 39593 TGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTA 39652 |||| | ||| || ||||| || ||||| |||||||| || | || ||||| | | Sbjct 1481 TGCACCAGATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAG 1422 Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 || | ||||| || ||||||||||| ||||| | ||||| ||||||||| || || Sbjct 1421 ATCAGCTCGTTCGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATT 1362 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 | ||| || ||| |||||| ||||| || || |||||||| |||| | | || Sbjct 1361 GAAGCGAAGCTTCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCC 1302 Query 39773 CCGTAACTTGTATCATTA-TG--TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA 39829 || | | | || | | || ||||||| | | |||||||| || |||||||| ||| Sbjct 1301 CCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACA 1242 Query 39830 CAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATAT 39889 || |||| || || || ||||| ||||| | | ||| || | ||| | || Sbjct 1241 CAGGGCAGCGTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTAC 1182 Query 39890 GTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCG 39949 || || |||| |||||| ||||| || || | || || || || |||||||| || Sbjct 1181 GTGTCAATTAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCA 1122 Query 39950 TAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCA 40009 || || |||| || || || ||||| ||||| || || | ||| ||| ||| ||| Sbjct 1121 TAGAAGAATCTAGCCTCTGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCA 1062 Query 40010 TTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 || || || ||||| ||||||||| || ||||| || || ||| || | | ||| Sbjct 1061 TTGACAATCCCATCGGAAGCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCA 1002 Query 40070 TCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 40129 ||| | |||||||| || ||||| || | ||| ||||| || | ||| Sbjct 1001 CAATCCTTCAGTGCATTCCAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTC 942 Query 40130 CAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAA 40189 || || ||||| || || | ||||||||| | ||| || ||| | || || || ||||| Sbjct 941 CAGAAGGACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAAT 882 Query 40190 ATAACAAATCTATTTGGATT 40209 | || ||||| | ||||| Sbjct 881 ACCACGAATCTCCTGGGATT 862 >seq2745 Length=20976 Score = 210 bits (232), Expect = 3e-49 Identities = 420/620 (68%), Gaps = 3/620 (0%) Strand=Plus/Minus Query 39593 TGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTA 39652 |||| | ||| || ||||| || ||||| |||||||| || | || ||||| | | Sbjct 4205 TGCACCAGATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAG 4146 Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 || | ||||| || ||||||||||| ||||| | ||||| ||||||||| || || Sbjct 4145 ATCAGCTCGTTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATT 4086 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 | ||| || ||| ||||| ||||| || || |||||||| |||| | | || Sbjct 4085 GAAGCGAAGCTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCC 4026 Query 39773 CCGTAACTTGTATCATTA-TG--TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA 39829 || | | | || | | || ||||||| | | |||||||| || |||||||| ||| Sbjct 4025 CCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACA 3966 Query 39830 CAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATAT 39889 || |||| || || || ||||| || || | | ||| || | | ||| | || Sbjct 3965 CAGGGCAGCGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTAC 3906 Query 39890 GTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCG 39949 || || || | |||||| ||||| || || | || || || || |||||||| || Sbjct 3905 GTGTCAATCAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCA 3846 Query 39950 TAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCA 40009 || || |||| || || || ||||| ||||| || || | ||| ||| ||| ||| Sbjct 3845 TAGAAGAATCTAGCCTCGGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCA 3786 Query 40010 TTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 || || || ||||| |||||| || || ||||| || || ||| || | | ||| Sbjct 3785 TTGACAATCCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCA 3726 Query 40070 TCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 40129 ||| | |||||||| || |||||| |||| ||| || || || | ||| Sbjct 3725 CAATCCTTCAGTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTC 3666 Query 40130 CAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAA 40189 || || ||||| || || | ||||||||| | ||| || ||| | || || || ||||| Sbjct 3665 CAGAAGGACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAAT 3606 Query 40190 ATAACAAATCTATTTGGATT 40209 | || ||||| | ||||| Sbjct 3605 ACCACGAATCTCCTGGGATT 3586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685991553506640