Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26202 163 2e-35 seq2745 159 3e-34 seq7333 105 5e-18 >seq26202 Length=13276 Score = 163 bits (180), Expect = 2e-35 Identities = 407/613 (66%), Gaps = 5/613 (1%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| | || ||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 850 TTGCTCAGGGAGAATCCCAGGAGATTCGTGGTATTTCCTATTCAGTACCATGACATCTGG 909 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 | ||||||||| |||| | ||||| || ||||| | || ||||| ||| || | Sbjct 910 GAGATGTACAAACAAGCTGAAGCGTCCTTCTGGACGGTGGAGGAAGTGGATCTGTCCCGG 969 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || | | || |||| |||| | || || | | || || || || ||| Sbjct 970 GATATTGATCACTGGAATGCACTGAAGGATTGTGAGAGGAAGTTCATTTCCCACGTGTTG 1029 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || ||||| || ||| ||||| |||||||| ||| |||| || || || Sbjct 1030 GCTTTCTTTGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCTTCAGTCAG 1089 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || ||| || |||| || ||| || ||||| ||||| |||||||| || ||| | Sbjct 1090 GAGGTGCAAATAACAGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGGAGAATGTG 1149 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || ||||||||||| || || || ||||||||| ||| ||| ||||| | Sbjct 1150 CACAGTGAGATGTACAGTCTGCTAATTGACACGTACATCCGGGATCCGCAGGAGAAAGAG 1209 Query 44036 CGATTGTTTAATGCGATAGAAACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | || ||||| || || || | |||| | | || | || ||||| ||||| || Sbjct 1210 TTCCTCTTCAATGCCATTGAGACGCTGCCCTGTG-TCAAGAAGAAGGCAGATTGGGCTCT 1268 Query 44095 TAAATGGAT--AAATTCA-AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 | ||||| | ||| | | | ||||| ||||| | | || ||||||| ||| Sbjct 1269 GCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGTGATTGCCTTTGCAGCTGT 1328 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 || |||||||||||| ||| || || | || || ||| | || ||| || | Sbjct 1329 TGAGGGCATTTTCTTTAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAAATCACGTGGCAT 1388 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||| || | || || || || ||| | || ||| |||||||| || || || || Sbjct 1389 CATGCCCGGACTCACATTCTCGAACGAGCTGATCTCTCGCGATGAAGGTTTGCACTGTGA 1448 Query 44272 TTTTGCTTGCTTG 44284 ||||| || ||| Sbjct 1449 CTTTGCCTGTTTG 1461 >seq2745 Length=20976 Score = 159 bits (176), Expect = 3e-34 Identities = 406/613 (66%), Gaps = 5/613 (1%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| | || ||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 3574 TTGCTCAGGGAGAATCCCAGGAGATTCGTGGTATTTCCTATTCAGTACCATGACATCTGG 3633 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 | ||||||||| |||| | ||||| || ||||| | ||| || || ||| | | | Sbjct 3634 GAGATGTACAAACAAGCTGAAGCGTCCTTCTGGACGGTAGAGGAGGTGGATCTATCCCGA 3693 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || | | || |||| |||| | || || | | || || || || ||| Sbjct 3694 GATATTGATCACTGGAATGCACTGAAGGATTGTGAGAGGAAGTTCATTTCCCACGTGTTG 3753 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || || || ||| ||||| |||||||| ||| |||| || || || Sbjct 3754 GCTTTCTTCGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCTTCAGTCAG 3813 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || ||| || | || || ||| || ||||| ||||| |||||||| || ||| | Sbjct 3814 GAGGTGCAAATAACCGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGGAGAATGTG 3873 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || ||||||||||| ||||| || ||||||||| ||| || ||||| | Sbjct 3874 CACAGTGAGATGTACAGTCTGCTGATTGACACGTACATCCGGGATCCTCAAGAGAAAGAG 3933 Query 44036 CGATTGTTTAATGCGATAGAAACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 |||| ||||| || || || | |||| | | || | || ||||| ||||| || Sbjct 3934 TTCCTGTTCAATGCCATTGAGACGCTGCCCTGTG-TCAAGAAGAAGGCAGATTGGGCTCT 3992 Query 44095 TAAATGGAT--AAATTCA-AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 | ||||| | ||| | | | ||||| ||||| | | || ||||||| ||| Sbjct 3993 GCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGTGATTGCCTTTGCAGCTGT 4052 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 || ||||||||||| ||| || || | || || ||| | || ||| || | Sbjct 4053 TGAGGGCATTTTCTTCAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAAATCACGTGGCAT 4112 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||| || | || || ||||| ||| | || ||| |||||||| || || || || Sbjct 4113 CATGCCCGGACTCACATTCTCAAACGAGCTGATCTCTCGCGATGAAGGATTGCACTGTGA 4172 Query 44272 TTTTGCTTGCTTG 44284 ||||| || ||| Sbjct 4173 CTTTGCCTGTTTG 4185 >seq7333 Length=2231 Score = 105 bits (116), Expect = 5e-18 Identities = 195/285 (68%), Gaps = 1/285 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCC-ACC 41062 || || || || || |||| ||||| || ||| ||| | |||||| | || ||| Sbjct 1293 CGGCGGATTATCATGAGCGCATGGAATCCTGTGGATTTACCCATAATGGCACTACCCACC 1352 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||||| | | ||||||||||| |||||| ||||| || || || ||||||| Sbjct 1353 CTGTCACTGCCTCGTGCAGTTTTACGTGGCCAATGGGGAACTCTCCTGCCAGATGTATCA 1412 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 | |||| | || ||||| | || || || || ||||| || || || || || ||||| Sbjct 1413 ACGATCGGCAGATATGGGCTTGGGTGTTCCATTCAACATTGCCAGCTACGCCCTTCTCAC 1472 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 || || || ||| | || || | || ||||| || ||||| ||||| | ||||| Sbjct 1473 TCGAATCATCGCCCACATAACTGATCTCAAGCCTGGGGATTTTGTCCACACTCTGGGAGA 1532 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACT 41287 || ||| | || | |||||| | ||||| | | ||| ||||| Sbjct 1533 TGCTCATGTCTATCTAAATCACGTTGAGCCTCTGAAAGAGCAACT 1577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396938535390130