Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4578 212 8e-50 >seq4578 Length=10518 Score = 212 bits (234), Expect = 8e-50 Identities = 474/699 (68%), Gaps = 31/699 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | |||||| ||||| ||| |||||||||| || | || || || || || Sbjct 3590 GTACATGTTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGA 3649 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG--- 110823 |||||||||||||| || | || | ||||| || | || || || | Sbjct 3650 AGCTGTTGGCATTGGGGCAACCAGCA-------ACGAATTCCTCACACCATGTTGGGCAA 3702 Query 110824 ----TTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTC 110877 | |||| || ||||||| | | | | | |||||||| | ||||||| || Sbjct 3703 TTTTTGCCTTTAGCTCATCCCAATTCCACAAATCCG-TTGGTTTCTTGT-CCCACATCTC 3760 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 ||||||| | || | | | | ||| | || | | || || |||| || | Sbjct 3761 GTACTGAAGGATACCCTTGCTCACTGGACATCCTGCGTACGTCTCGTAGGGTCCAAGCTT 3820 Query 110938 TTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 110997 ||||||||||| || || ||||||| || | | || ||||| || ||||| | Sbjct 3821 CTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAGTAGATGGTCTCGAAGATTTGCTG 3880 Query 110998 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCG 111056 ||| | | |||||| || || |||| | | | || ||| |||||| || |||||| Sbjct 3881 ATTGAGTTTCTTGGCCTCTTCGCTATCATAGG-GCAGACGCATCAAAATGAAAGCATCCG 3939 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCGCAGT 111114 | ||||| ||||| || | ||||| || ||||||| |||||| ||| ||| || | | Sbjct 3940 CTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTCATATTGGACAATTTGGC-CTCT 3998 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 || ||||||| | || |||| |||||| ||| | ||| ||||||||||| || Sbjct 3999 GGCA-CGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCGTAACAATCTTCGT 4057 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGA 111232 | | | | ||||| ||| | || | || | || ||| | ||||| ||| Sbjct 4058 TACTGCTTTGAGTTTCTCAAAGTCGTACGTCTTA-TCAGCCTTTACGAACATA--TTG-- 4112 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || || ||||||| |||||| ||||| |||||||||| | || |||| |||| Sbjct 4113 AGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACGAATATTCTACAATT 4172 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 ||||| || || ||| || ||| ||||| | ||||| || ||||||||| ||||| Sbjct 4173 TCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTGATTACTCTTCCTGTTG 4232 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 |||||||| ||||| | |||||| |||||||| || ||| Sbjct 4233 CACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCC 4271 Score = 201 bits (222), Expect = 1e-46 Identities = 472/700 (67%), Gaps = 33/700 (5%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | |||||| ||||| ||| |||||||||| || | || || || || || Sbjct 6917 GTACATGTTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGA 6976 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG--- 110823 |||||||||||||| || | || | ||||| || | || || || | Sbjct 6977 AGCTGTTGGCATTGGGGCAACCAGCA-------ACGAATTCCTCACGCCATGTTGGGCAA 7029 Query 110824 ----TTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTC 110877 | |||| | ||||||| | | | | | |||||||| | ||||||| || Sbjct 7030 TTTTTGCCTTTAACTCATCCCAATTCCACAAATCCG-TTGGTTTCTT-TCCCCACATTTC 7087 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 |||| || | || | | | | ||| | || | | || || |||| || | Sbjct 7088 GTACTGCAGGATACCCTTGCTCACTGGACATCCTGCGTATGTCTCGTAGGGTCCAAGCTT 7147 Query 110938 TTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 110997 ||||||||||| || || ||||||| || ||| || ||||| || ||||| | Sbjct 7148 CTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGTAGTAGATGGTCTCGAAGATTTGCTG 7207 Query 110998 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCG 111056 ||| | | ||||||||| || ||| | | | || ||| |||||| || |||||| Sbjct 7208 ATTGAGTTTCTTGGCTTCTTCGCTGTCATAGG-GCAGACGCATCAAAATGAAAGCATCCG 7266 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCGCAGT 111114 | ||||| ||||| || | ||||| || ||||| | |||||| ||| ||| || | Sbjct 7267 CCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCCTCATATTGGACAATTTGGCC---T 7323 Query 111115 CTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 111173 || |||||||| | || |||| |||||| ||| | ||| ||||||||||| | Sbjct 7324 CTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCGTAACAATCTTCG 7383 Query 111174 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGG 111231 | | | | | ||||| ||| |||| | || | || ||| | ||||| ||| Sbjct 7384 TCACTGCTTTGAGTTTCTCAAAATCGTACGTCTTA-TCAGCCTTTACGAACATA--TTG- 7439 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || || || ||||||| |||||| ||||| |||||||||| | || |||| ||| Sbjct 7440 -AGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACGAATATTCTACAAT 7498 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 |||||| || || ||| || ||| ||||| | ||||| || || |||||| |||| Sbjct 7499 TTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTGATTGCTCTTCCTGTT 7558 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 ||||||||| ||||| | |||||| |||||||| || ||| Sbjct 7559 GCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCC 7598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627193373169600