Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4578 136 5e-27 seq35959 84.2 3e-11 >seq4578 Length=10518 Score = 136 bits (150), Expect = 5e-27 Identities = 351/531 (66%), Gaps = 19/531 (4%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || |||| |||||||| | | | |||| |||| | | ||||| || || Sbjct 3752 CCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTGCGTACGTCTCGTAGGG 3811 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || ||| ||||||||| | || ||||| | ||| | | || || || || || Sbjct 3812 TCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAGTAGATGGTCTCGAA 3871 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 || | ||| | | ||||||||| ||| |||| | | || || |||||| || Sbjct 3872 GATTTGCTGATTGAGTTTCTTGGCCTCTTCGCTATCATAGGGCAGACGCATCAAAATGAA 3931 Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC--TTC 118580 ||||||| ||||| || || || | |||||||| | ||||||||||| ||| || Sbjct 3932 AGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTCATATTGGACAATT- 3990 Query 118581 CGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||| ||||||||| | || | ||||| || | || | ||| || Sbjct 3991 ----TGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCGTA 4046 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTG 118694 |||| ||| || | | | | || |||| ||||| | |||| ||| || Sbjct 4047 ACAATCTTCGTTACTGCTTTGAG--TTTC----TCAAAGTCGTACGTCTTATCAGCCTTT 4100 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 || || || || || || || |||||||| ||||||| |||||||||| | Sbjct 4101 ACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACGAA 4160 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 || |||| |||||| |||||||| || || ||| || || | |||| ||||| Sbjct 4161 TATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTGATTA 4220 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 ||| |||| |||||||| ||||| | |||||| |||||||| || ||| Sbjct 4221 CTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCC 4271 >seq35959 Length=4883 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/217 (70%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGCA---TCTTTGCCACCCATGAGACGCGTCCCAAAT 179094 ||||||||||| | | |||| ||| || |||||||| |||| | ||| || ||| Sbjct 1658 GTGAAGATGTAACGGG---GAGATGCACTATCCTTGCCACCATTGAGTCTCGTGCCGAAT 1714 Query 179095 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 179154 |||||| ||||| ||||||||||||||| || || | || | | |||| ||| Sbjct 1715 TGACCATTTGGCTGAAGGAGATTGATATTATTGCTGCCAACATAATTCTGAGCCAGATTG 1774 Query 179155 ACAATCGTATCCGCGAGGGAGACT----TCACCGTGATGGTAAGCCGACTTGTCCGCCAC 179210 ||||| || || | |||||| ||||| || || || || ||||| || ||||| Sbjct 1775 ACAATGGT---CG-AACAGAGACTCTGCTCACCATGGTGATAGGCTGACTTCTCAGCCAC 1830 Query 179211 ATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTG 179247 | | ||||| || || ||||| | ||| | |||| Sbjct 1831 TGAACCAGCCAATTGTGCAACCTTAACCTCTTTCTTG 1867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617609388016560