Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4578 147 3e-30 >seq4578 Length=10518 Score = 147 bits (162), Expect = 3e-30 Identities = 585/912 (64%), Gaps = 29/912 (3%) Strand=Plus/Minus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT-TGAGGAGAGTGG 104757 ||||| |||| ||||| ||||| || ||||| || ||| ||||||| | | ||| || Sbjct 4486 GATCTGTTCTATGCTCTGTGGATCCCGGATCTGTTTATGCAGAGAGTATCTGAAGATGGG 4427 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGA 104817 ||| || | | | ||||| | || || || | | ||| | ||||||| | Sbjct 4426 GAAT-GGAGTTTGATGTGTCCGAATCAGAGTCCAGGATTATTTGATTGCTGGGGTGAGAA 4368 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGC 104877 ||| | | | |||| ||||| ||| | |||||| || | || | || || Sbjct 4367 GTTCAATGAATTGTACATGAAGTATGAGAAGGAAGGTAGGTATATCAGGAGAATTCCTGC 4308 Query 104878 TGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCT 104937 ||| | ||| || || | || |||| || ||||| || || |||||| | Sbjct 4307 GAGGGATCTCTGGTTTGCCATAATTCAGAGTCAAGTGGAAACTGGGACGCCGTACATGTT 4248 Query 104938 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 104997 |||||||| || || ||| ||||||||||| ||||| | || || || Sbjct 4247 GTACAAAGATGCGTGCAACAGGAAGAGTAATCAGCAGAATATTGGGACAATTCGCTGTAG 4188 Query 104998 CAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCT 105057 |||| | || |||||||| | |||| | | ||| ||||||| |||||||| || || Sbjct 4187 CAATTTGTGCACAGAAATTGTAGAATATTCGTCCAAGGATGAGATTGCTGTGTGCAATCT 4128 Query 105058 CGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAA 105117 ||||| || |||||| | || || | | || | |||| | || | ||| || Sbjct 4127 GGCATCTATTGCTCTCAATATGTTCGTAAAGGCTGATA---AGACGTACGACTTTGAGAA 4071 Query 105118 ACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTT 105177 |||| | | ||| ||||| | ||| || || | |||| ||| || || | || | Sbjct 4070 ACTCAAAGCAGTAACGAAGATTGTTACGCGCAATTTGAACAAAGTCATCGACATCAACTA 4011 Query 105178 TTACCCCGTTGAGACTGCTCGTAAAT---CTAATATGAGACACCGTCCAATTGGTCTCGG 105234 || ||||| | | | |||| | |||||||||||| | |||||||| | || Sbjct 4010 CTATCCCGT---GCCAGAGGCCAAATTGTCCAATATGAGACACAGGCCAATTGGGATTGG 3954 Query 105235 TGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGC 105294 ||||||||||| ||||||| |||||| | || | | | |||| ||| || || Sbjct 3953 GGTTCAGGGTCTAGCGGATGCTTTCATTTTGATGCGTCTGCCCTATGATAGCGAAGAGGC 3894 Query 105295 GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTC 105354 ||| || ||||| || || || |||||||| || | | || | ||||| |||| Sbjct 3893 CAAGAAACTCAATCAGCAAATCTTCGAGACCATCTACTATGGTGCCTTGGAGGCCAGTTG 3834 Query 105355 AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGG 105414 || ||||| ||| ||| || || || || | | || | ||||| | ||||| Sbjct 3833 CGAATTGGCTGAGAAGCTTGGACCCTACGAGACGTACGCAGGATGTCCAG-TGAGCAAGG 3775 Query 105415 G-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAGCT 105472 | | ||||| | || ||||||| | || ||||| | | | | ||||| | Sbjct 3774 GTATCCTTCAGTACGAGATGTGGG-ACAAGAAACCAACGGATTTGTGGAATTGGGATGAG 3716 Query 105473 CTCAAGGAA-------CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 || |||| | | || || || | || ||||| | || | || || Sbjct 3715 CTAAAGGCAAAAATTGCCCAACATGGTGTGAGGAATTCGT-------TGCTGGTTGCCCC 3663 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 |||||||||||| || || || || || | || |||||||||| ||| ||||||||||| Sbjct 3662 AATGCCAACAGCTTCAACGGCCCAGATTCTAGGCAATAATGAATCCTTCGAACCCTACAC 3603 Query 105586 GACGAACATCTA 105597 | ||||| || Sbjct 3602 ATCCAACATGTA 3591 Score = 136 bits (150), Expect = 5e-27 Identities = 452/696 (65%), Gaps = 29/696 (4%) Strand=Plus/Minus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 || ||||| || || |||||| | |||||||| || || ||| ||||| ||||| || Sbjct 7597 GAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGCAACAGGAAGAGCAATCAGCAG 7538 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | || || || |||| | || |||||||| | |||| | | ||| Sbjct 7537 AATATTGGGACAATTCGCTGTAGCAATTTGTGCACAGAAATTGTAGAATATTCGTCCAAG 7478 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 ||||||| |||||||| || || ||||| || |||||| | || || | | || Sbjct 7477 GATGAGATTGCTGTGTGCAATCTGGCATCTATTGCTCTCAATATGTTCGTAAAGGCTGAT 7418 Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154 | |||| | |||| ||| |||||| | | ||| ||||| | ||| || || | Sbjct 7417 A---AGACGTACGATTTTGAGAAACTCAAAGCAGTGACGAAGATTGTTACGCGCAATTTG 7361 Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAAT---CTAATAT 105210 |||| ||| || || | || | || ||||| ||| | |||| | ||||| Sbjct 7360 AACAAAGTCATCGACATCAACTACTATCCCGTACCAGAGGCC----AAATTGTCCAATAT 7305 Query 105211 GAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCG 105270 ||| ||| | |||||||| | || ||||||||||| ||||||| |||||| | || Sbjct 7304 GAGGCACAGGCCAATTGGGATTGGGGTTCAGGGTCTGGCGGATGCTTTCATTTTGATGCG 7245 Query 105271 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 | | | ||| ||| ||||| ||| || ||||| || || || |||||||| || Sbjct 7244 TCTGCCCTATGACAGCGAAGAAGCCAAGAAACTCAATCAGCAAATCTTCGAGACCATCTA 7185 Query 105331 TCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 ||| || | ||||| |||| || ||||| ||| ||| || || || || | Sbjct 7184 CTACGGTGCCTTGGAGGCAAGTTGCGAATTGGCTGAGAAGCTTGGACCCTACGAGACATA 7125 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCA 105449 | || | ||||| | |||||| | || || | || ||||||| | || |||| Sbjct 7124 CGCAGGATGTCCAG-TGAGCAAGGGTATCCTGCAGTACGAAATGTGGGGA-AAGAAACCA 7067 Query 105450 A-GCTTCACTACGACTGGGAAGCTCTCAAGGAA-------CGCATCAAGGAGAAGGGTCT 105501 | | | | | ||||| | | |||| | | || || || | || | Sbjct 7066 ACGGATTTGTGGAATTGGGATGAGTTAAAGGCAAAAATTGCCCAACATGGCGTGAGGAAT 7007 Query 105502 TCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 105561 |||| | || | || |||||||||||||| || || || || || | || || Sbjct 7006 TCGT-------TGCTGGTTGCCCCAATGCCAACAGCTTCAACGGCCCAGATTCTAGGCAA 6954 Query 105562 TAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||||||| ||| ||||||||||| | ||||| || Sbjct 6953 TAATGAATCCTTCGAACCCTACACATCCAACATGTA 6918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582481957272240