Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4578 141 1e-28 seq2745 95.1 1e-14 seq26202 86.0 7e-12 >seq4578 Length=10518 Score = 141 bits (156), Expect = 1e-28 Identities = 715/1118 (64%), Gaps = 55/1118 (5%) Strand=Plus/Plus Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGG 78585 ||||| ||| ||||||| ||||| || ||||| | || || || || | |||||| Sbjct 6909 CGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGG 6968 Query 78586 GCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTG 78645 || || || || || ||||| || || ||||| | ||||||| | ||||| ||| Sbjct 6969 GCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAACGAATTCCTCACGCCATG----TTG 7024 Query 78646 ----ATCTCGACCTTTAGGCCGTCCCAA-------AATTCATTCGCCGCGATCCCCCACA 78694 || | |||||| | |||||| ||| | || | | ||||| ||| Sbjct 7025 GGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAATCCGTTGGTTTCTTTCCCC-ACA 7083 Query 78695 TGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCT 78754 | || || |||||||||| | | | || | || | | |||||||| | ||| Sbjct 7084 TTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTGCGTATGTCTCGTAGGGTCCAA 7143 Query 78755 CCTCCTTGGCGAGTTCGCA---TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGA 78811 || || || | |||||| || ||| || ||| ||| ||| | | |||||||| Sbjct 7144 GCTTCTCAGCCAATTCGCAACTTGCCTC---CAAGGCACCGTAGTAGATGGTCTCGAAGA 7200 Query 78812 TGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAA--CGAAAGGCCGA-GCATCA--- 78865 | || ||||| | ||||| || ||| | | ||| || |||||| Sbjct 7201 TTTGCTGATTGAGTTT------CTTGGCTTCTTCGCTGTCATAGGGCAGACGCATCAAAA 7254 Query 78866 TGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCT 78925 |||| |||| ||||| ||||| || || || | || || | ||| | ||| ||| | Sbjct 7255 TGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCCTCATATTGGACA 7314 Query 78926 TTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984 | |||| | | | |||| || |||| |||||||| ||||| || ||||| Sbjct 7315 ATTTGGCCTC-TGGTACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCGTA 7373 Query 78985 ACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATT-TC--CTTTGATGAAA 79041 || | | ||||| | | | ||| | ||||| | || || | || | ||| Sbjct 7374 ACAATCTTCGTCACTGCTTTGAGTTTCTCAAAATCGTACGTCTTATCAGCCTTTACGAAC 7433 Query 79042 GTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTC 79100 | || ||| | |||||||| |||||||| || |||| ||| | ||| || Sbjct 7434 ATATTGAGAGCA-ATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACGAATATTC 7492 Query 79101 GATGATTTCTGTGCACAAATT---AGA-CGACTTGATGGTGCCGATGTTCTTCTGGTTGC 79156 | ||||||||||||||||| | | ||| ||| | || || |||| ||| |||| Sbjct 7493 TACAATTTCTGTGCACAAATTGCTACAGCGAATTG----TCCCAATATTCTGCTGATTGC 7548 Query 79157 TCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCT 79216 ||||| ||| || || || ||||| |||||||||||||||| || || || ||||||| Sbjct 7549 TCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCACTTGACTCT 7608 Query 79217 TGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCT--TGTACCGACCCTGTGC 79274 | | | | ||||| || | | | ||| | || || | |||| ||| | Sbjct 7609 GAATTATGGCAAACCAGAGATCTCTCG-CAGGA-ATTCTCCTGATATACCTACCTTCCTT 7666 Query 79275 GACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCA 79334 | ||| || |||||| || ||||| ||| || || ||| || || || | Sbjct 7667 CTCATACTTCATGTACAATTCATTGAATTTCTCACCCCAGCAATCAAACAATCCTGGACT 7726 Query 79335 CTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA-ACCTTCTCCATGAAGAGGT 79393 || | ||| ||||||| ||| ||| | | |||| | || ||| ||| || || | Sbjct 7727 CTGATTCGGACACATCAAACTCCATTCCCCAT-CTTCAGATACTCTCTGCATAAACAGAT 7785 Query 79394 CCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCA 79453 ||||||||||||| || ||| || || | || || ||| | |||| ||| Sbjct 7786 CCGGGATCCACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTCTCCTTGCCCGTATTCT 7845 Query 79454 GACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACG 79513 || || | ||| || | |||||| ||||||| |||||||| ||||| || || | Sbjct 7846 TCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGG 7905 Query 79514 AACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGA 79573 ||| |||||| || ||||| | ||||| | ||| || ||||| | || || | Sbjct 7906 CACCGGGACGCTTGTTCCCACCCTGATCAACGTAGCAGGCTGTTGTGTTGTAGACACGAA 7965 Query 79574 GCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCG 79611 |||| || || | ||| | || | ||| || || ||| Sbjct 7966 GCATTGGGACAAGGCCATTGGAGGTGCCATTGGTGCCG 8003 Score = 125 bits (138), Expect = 8e-24 Identities = 686/1075 (64%), Gaps = 53/1075 (5%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| ||||||| ||||| || ||||| | || || || || | |||||||| || || Sbjct 3590 GTACATGTTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGA 3649 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTG----ATCT 78649 || || ||||| || || ||||| | ||||||| | |||||| ||| || | Sbjct 3650 AGCTGTTGGCATTGGGGCAACCAGCAACGAATTCCTCACACCATG----TTGGGCAATTT 3705 Query 78650 CGACCTTTAGGCCGTCCCAA-------AATTCATTCGCCGCGATCCCCCACATGTCCGGT 78702 ||||||| | |||||| ||| | || | | | ||||||| || Sbjct 3706 TTGCCTTTAGCTCATCCCAATTCCACAAATCCGTTGGTTTCT-TGTCCCACATCTCGTAC 3764 Query 78703 TGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG 78762 ||||||||||||| | | | || | || | |||||||||| | ||| || || Sbjct 3765 TGAAGGATACCCTTGCTCACTGGACATCCTGCGTACGTCTCGTAGGGTCCAAGCTTCTCA 3824 Query 78763 GCGAGTTCGCATGACTCGAG--CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGT 78820 || | |||||| ||| | || ||| | | ||| | | ||||||||| || | Sbjct 3825 GCCAATTCGCA--ACTGGCCTCCAAGGCACCATAGTAGATGGTCTCGAAGATTTGCTGAT 3882 Query 78821 TGAGCTCGCGCGCCTTGGTCTCGTCG--AACGAAAGGCCGA-GCATCA---TGAAGACAT 78874 |||| | ||||| ||| ||| | | | ||| || |||||| |||| ||| Sbjct 3883 TGAGTTT------CTTGGCCTCTTCGCTATCATAGGGCAGACGCATCAAAATGAAAGCAT 3936 Query 78875 CGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCG 78934 | || || ||||| || || || | || || | ||| | ||| ||| | | |||| Sbjct 3937 CCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTCATATTGGACAATTTGGCCT 3996 Query 78935 CCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGA 78993 | | | |||| || |||| |||||||| ||||| || ||||| || | | Sbjct 3997 C-TGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATTGCGCGTAACAATCTTC 4055 Query 78994 GTCACCTCGTACAATTTGGCGAAATCAAAATGATT-TC--CTTTGATGAAAGTCGGTAG- 79049 || || | | | ||| | || || | || || | || | ||| | || Sbjct 4056 GTTACTGCTTTGAGTTTCTCAAAGTCGTACGTCTTATCAGCCTTTACGAACATATTGAGA 4115 Query 79050 GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTC 79109 ||| | |||||||| |||||||| || |||| ||| | ||| || | ||||| Sbjct 4116 GCA-ATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACGAATATTCTACAATTTC 4174 Query 79110 TGTGCACAAATT---AGA-CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGT 79165 |||||||||||| | | ||| ||| | || || |||| ||| || |||||| || Sbjct 4175 TGTGCACAAATTGCTACAGCGAATTG----TCCCAATATTCTGCTGATTACTCTTCCTGT 4230 Query 79166 TACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGC 79225 | || || || ||||| |||||||||||||||| || || || ||||||| | | | Sbjct 4231 TGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCACTTGACTCTGAATTATGG 4290 Query 79226 CGTCCCAGATGTCCCGGGCCCGGACAACCTTCT--TGTACCGACCCTGTGCGACGTACGT 79283 | ||||| |||| | | ||| | || || | |||| ||| | | ||| | Sbjct 4291 CAAACCAGAGATCCCTCG-CAGGA-ATTCTCCTGATATACCTACCTTCCTTCTCATACTT 4348 Query 79284 CCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGG 79343 | |||||| || ||||| ||| || || ||| | || || | || | ||| Sbjct 4349 CATGTACAATTCATTGAACTTCTCACCCCAGCAATCAAATAATCCTGGACTCTGATTCGG 4408 Query 79344 GCACATCAGGTGCCAGTCCTCGTCCTTCTCA-ACCTTCTCCATGAAGAGGTCCGGGATCC 79402 ||||||| ||| ||| | | |||| | || ||| ||| || || |||||||||| Sbjct 4409 ACACATCAAACTCCATTCCCCAT-CTTCAGATACTCTCTGCATAAACAGATCCGGGATCC 4467 Query 79403 ACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCT 79462 |||| || ||| || || | || || ||| | |||| |||| || | Sbjct 4468 ACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTCTCCTTGCCCGTGTTCTTCTTGAGAT 4527 Query 79463 CGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGC 79522 | | ||| || | ||||| ||||||| |||||||| ||||| || || | ||| | Sbjct 4528 CCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGGCACCGGGAC 4587 Query 79523 GCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCAT 79577 ||||| || || || | ||||| | ||| || ||||| | || || ||||| Sbjct 4588 GCTTGTTCCCACCTTGATCAACGTAGCAGGCTGTCGTGTTGTAGACACGAAGCAT 4642 >seq2745 Length=20976 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 59870 GGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACA 59929 |||||| ||||||| | |||||| |||||| |||||| ||| || || | Sbjct 3915 GGATCCTCAAGAGAAAGAGTTCCTGTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAA 3974 Query 59930 AAAAGCAGAATGGGCCATGCAGTGGATG---AGTCCTGGAGCATCATTTGCACAACGTCT 59986 || ||||| ||||| |||||||||| |||| | ||| |||| ||||| | Sbjct 3975 GAAGGCAGATTGGGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGT 4034 Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 || || |||||| || || || || |||||| || ||| | | || ||||| Sbjct 4035 GATTGCCTTTGCAGCTGTTGAGGGCATTTTCTTCAGCGGAAGCTTCGCTTCAATCTTCTG 4094 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 ||||||| |||||| ||||||| || || | ||||| ||||||||||| || || || Sbjct 4095 GCTCAAATCACGTGGCATCATGCCCGGACTCACATTCTCAAACGAGCTGATCTCTCGCGA 4154 Query 60107 CGAGGG 60112 || || Sbjct 4155 TGAAGG 4160 >seq26202 Length=13276 Score = 86.0 bits (94), Expect = 7e-12 Identities = 167/246 (68%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 59870 GGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACA 59929 ||||||| | ||||| | || ||| |||||| |||||| ||| || || | Sbjct 1191 GGATCCGCAGGAGAAAGAGTTCCTCTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAA 1250 Query 59930 AAAAGCAGAATGGGCCATGCAGTGGATG---AGTCCTGGAGCATCATTTGCACAACGTCT 59986 || ||||| ||||| |||||||||| |||| | ||| |||| ||||| | Sbjct 1251 GAAGGCAGATTGGGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGT 1310 Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 || || |||||| || || || || ||||| || ||| | | || ||||| Sbjct 1311 GATTGCCTTTGCAGCTGTTGAGGGCATTTTCTTTAGCGGAAGCTTCGCTTCAATCTTCTG 1370 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 ||||||| |||||| ||||||| || || | ||||| ||||||||||| || || || Sbjct 1371 GCTCAAATCACGTGGCATCATGCCCGGACTCACATTCTCGAACGAGCTGATCTCTCGCGA 1430 Query 60107 CGAGGG 60112 || || Sbjct 1431 TGAAGG 1436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547792341121440