Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq35959 129 6e-25 seq3625 86.0 7e-12 >seq35959 Length=4883 Score = 129 bits (142), Expect = 6e-25 Identities = 203/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | |||| ||||||||||||| || | ||| |||||||| Sbjct 1658 GTGAAGATGTAACGGGGAGATGCACTATCCTTGCCACCATTGAGTCTCGTGCCGAATTGA 1717 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | ||| || | || ||| ||| ||| | || ||||||| |||||| Sbjct 1718 CCATTTGGCTGAAGGAGATTGATATTATTGCTGCCAACATAATTCTGAGCCAGATTGACA 1777 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||| ||| ||||||||||||||| || | || ||| ||||| | || Sbjct 1778 ATGGTCGAACAGAGACTCTGCTCACCATGGTGATAGGCTGACTTCTCAGCCACTGAACCA 1837 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 |||| || || ||||| | ||| | |||| || ||||| || | | |||||| Sbjct 1838 GCCAATTGTGCAACCTTAACCTCTTTCTTGTCA--TTGCGCTTGAAACATGTAAAAATCA 1895 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 | || ||||| | ||||||| |||||| |||| || |||||||| Sbjct 1896 CTTTACGCTGTCCCGGCTTCAAGCCATCCACCACACACGGAATCGAACG 1944 Score = 116 bits (128), Expect = 4e-21 Identities = 227/328 (69%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 151992 CGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATC-GGGAGCTGG 152050 ||||| ||| ||| |||||| || || | |||||||||||| | ||||| | | Sbjct 1621 CGGATGGAAAATCAGTCGAGCCAGGGGCGAGAGCATCGTGAAGATGTAACGGGGAGAT-G 1679 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | |||||||||||| || | ||| || || || ||| |||| ||||| |||| Sbjct 1680 CACTATCCTTGCCACCATTGAGTCTCGTGCCGAATTGACCATTTGGCTGAAGGAGATTGA 1739 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT-GCCCTGCAGACTCGCT 152169 || ||| ||| || |||||||||||| ||| ||||| || | | | |||||| Sbjct 1740 TATTATTGCTGCCAACATAATTCTGAGCCAGATTGACAATGGTCGAACAG-AGACTCTGC 1798 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 ||||| |||||||| || | || ||| || | | || ||||| || || ||||| | Sbjct 1799 TCACCATGGTGATAGGCTGACTTCTCAGCCACTGAACCAGCCAATTGTGCAACCTTAACC 1858 Query 152230 TCCGTC--GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCA 152287 || || |||| || ||||| ||| | ||||||| || ||||| || |||| Sbjct 1859 TCTTTCTTGTCA--TTGCGCTTGAAACATGTAAAAATCACTTTACGCTGTCCCGGCTTCA 1916 Query 152288 AACCGTCCACCACGTGAGGAATCGAACG 152315 | || |||||||| ||||||||||| Sbjct 1917 AGCCATCCACCACACACGGAATCGAACG 1944 >seq3625 Length=16079 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACG 119125 ||||| | ||||| | |||| |||||||||||||| || ||||| || || ||||| Sbjct 14931 AATTTTGTGCTGAAGATGTTGCAGAGCTTGGCACCGTAGCCATTCCGGCCCCCAGTCACC 14990 Query 119126 CGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 || ||||||||| ||||||||||| ||||| || || |||||||| Sbjct 14991 TTCTCCTCCTCGTCATTGTAGTTGGACGAGGTCAGGAGATGTCCAAAGAT 15040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546485288794800