Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq186 224 1e-53 seq83690 188 8e-43 seq18 178 1e-39 seq165 125 8e-24 seq60870 111 2e-19 seq7722 105 8e-18 seq7442 105 8e-18 seq28036 91.5 2e-13 seq35959 84.2 2e-11 >seq186 Length=148488 Score = 224 bits (248), Expect = 1e-53 Identities = 189/232 (81%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| |||||||| ||||| | ||||| ||||| || ||||||||||| ||| | Sbjct 12940 TAGAATGCAGATCTTTGTGAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGCC 12999 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 ||||| |||| ||| |||||||||| |||||||| |||||||| ||||| ||||| Sbjct 13000 CTCTGATACGATTGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGA 13059 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||||||||| ||||||||||| |||||||| || |||| ||||||||| | ||||| Sbjct 13060 CCAGCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTTTCTGACTA 13119 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || | || ||||| || || || ||||| ||||||||||| || |||||| Sbjct 13120 CAACATTCAGAAGGAGTCTACCCTCCATCTTGTCTTGCGTCTCCGTGGTGGA 13171 Score = 205 bits (226), Expect = 1e-47 Identities = 190/240 (79%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || ||||| ||||| |||||||| || ||||| || | Sbjct 13854 ATGCAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCT 13913 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || || |||||||| || || |||||||||||||||||| Sbjct 13914 GATACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 13973 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||||||||| || ||||| ||||||| |||||||| | ||||| || Sbjct 13974 CAACGTTTGATTTTTGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCGGACTACAAC 14033 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA--AGTTTAAA 27643 |||| |||||||| || |||||||| || |||||||||| |||||| | || ||||| Sbjct 14034 ATCCAGAAGGAATCAACCCTTCATCTTGTGCTGCGTCTTCGTGGTGGATATTAGATTAAA 14093 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || |||||||| ||||| || || ||||| ||||| || Sbjct 13171 AATGCAAATTTTTGTCAAAACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAACCATC 13230 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | |||||||| || || || |||||||| || || |||||||| Sbjct 13231 TGACACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCA 13290 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| ||||| ||||| ||||| |||||||||| ||| ||| | | ||||| || Sbjct 13291 GCAACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGTCCGACTACAA 13350 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||| | ||||| ||||| || || || Sbjct 13351 CATCCAGAAGGAGTCTACCCTTCATTTGGTCTTACGTCTCCGTGGAGG 13398 Score = 190 bits (210), Expect = 2e-43 Identities = 180/227 (79%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| |||||||| ||||| ||||| |||||||| || | | Sbjct 13400 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACCATTACCCTTGAGGTCGAACCTTCT 13459 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| |||||||||| |||||||| || || || ||||| Sbjct 13460 GATACTATTG-AAACGTGAAGGC-CAAATTCAGGATAAGGAGGGGATCCCACCGGACCAA 13517 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || |||||||| || |||| ||||||||| | ||||| ||| Sbjct 13518 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGATGGTCGTACCCTGTCTGACTACAAT 13577 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| ||| | ||||| || ||||| Sbjct 13578 ATCCAGAAGGAGTCTACCCTCCATCTTGTCCTCCGTCTCCGTGGTGG 13624 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| |||||||| || |||||| | | Sbjct 13626 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCT 13685 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 13686 GACACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 13745 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || || || | || |||| ||||| || | ||||| || Sbjct 13746 CAGCGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAAC 13805 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || || ||||| | ||||| Sbjct 13806 ATCCAGAAGGAGTCAACCCTTCACCTTGTGTTACGTCTCAGAGGTGG 13852 >seq83690 Length=433 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||| || | Sbjct 26 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCC 85 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||||| || || ||||||||||| ||||| |||||||||||| Sbjct 86 GATACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 145 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| |||||| | || |||| ||||| || | ||||| || Sbjct 146 CAGCGTCTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACTCTTTCGGACTACAAC 205 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||||||||| ||||| ||| | ||||| || ||||| Sbjct 206 ATTCAAAAGGAATCCACTCTCCATCTTGTCCTCCGTCTCCGTGGTGG 252 Score = 178 bits (196), Expect = 1e-39 Identities = 148/180 (82%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| |||||||| ||||| |||||||| || |||||| | | Sbjct 254 ATGCAGATCTTTGTCAAGACCCTTACCGG-AAGACCATTACTCTCGAAGTTGAGCCCTCT 312 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||||||||||||||| ||||| |||||||||||| Sbjct 313 GACACCATTGAGAATGTCAAGGCTAAAATTCAGGACAAGGAAGGAATCCCTCCAGACCAG 372 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || |||||||| || |||| |||||| || | || || ||| Sbjct 373 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGATGGTCGTACTCTTTCGGATTACAAT 432 >seq18 Length=974545 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || || || || || | ||||| || | Sbjct 449446 AATGCAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAACCCTC 449505 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| |||| |||| || || |||||||||||||||||||||||||| || || Sbjct 449506 AGATACCATTGAAAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCA 449565 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || ||||| || ||||| || ||||||| ||||| || | || || || Sbjct 449566 GCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGGATTACAA 449625 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| ||| || ||||| || |||||||| || ||||| Sbjct 449626 TATCCAGAAGGAGAGCACCCTGCATCTCGTGTTGCGTCTCCGTGGTGG 449673 >seq165 Length=164173 Score = 125 bits (138), Expect = 8e-24 Identities = 169/232 (73%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG---TC 27461 |||||| |||||||| ||||| |||| | || || || || | || || || || Sbjct 30570 AATGCAGATCTTTGTGAAGAC--TTACGGAGAAAACCATCACATTGGAAGTAGAACCCTC 30513 Query 27462 AGGTGATAGC-ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | ||| | |||| |||| ||| || || ||||||||||||||||||||| |||||| Sbjct 30512 A----ATAACCATTGAAAATGTGATTGCAAAGATTCAGGACAAGGAGGGAATTTCTCCAG 30457 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 | || |||| ||| || ||||| || ||||| || |||||| | ||| || | |||| Sbjct 30456 ATCAACAGCATCTGATCTTTGCCGGAAAGCAGCTTAAGGATGGCCATACACTCTCGGACT 30397 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | || ||||| ||| || ||||| || |||||||| | ||||| Sbjct 30396 ACAATATTCAGAAGGAGAGCACCCTCCATCTCGTGTTGCGTCTCCATGGTGG 30345 >seq60870 Length=785 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | || || || |||||||| || ||||| || || ||||| ||||| ||| |||| Sbjct 593 AAATGTTAAAGCCAAGATTCAGGATAAAGAGGGCATCCCACCAGATCAGCAACGTTTAAT 652 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 ||||||||| |||||| | || |||| |||||||| | || || ||| | || || || Sbjct 653 TTTTGCTGGAAAGCAATTAGAAGATGGACGTACCCTTTCTGATTACAATATTCAGAAAGA 712 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||||| || | || ||||| ||||| Sbjct 713 GTCAACACTGCATCTTGTTCTTCGCCTTCGTGGTGG 748 >seq7722 Length=1803 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||| || ||||| || || ||||| ||||| ||| ||||||||||||| ||| Sbjct 1 AAGATTCAGGATAAAGAGGGCATCCCACCAGATCAGCAACGTTTAATTTTTGCTGGAAAG 60 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||| | || |||| |||||||| | || || ||| | || || || || || || ||| Sbjct 61 CAATTAGAAGATGGACGTACCCTTTCTGATTACAATATTCAGAAAGAGTCAACACTGCAT 120 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | || ||||| ||||| Sbjct 121 CTTGTTCTTCGCCTTCGTGGTGG 143 >seq7442 Length=2102 Score = 105 bits (116), Expect = 8e-18 Identities = 159/227 (70%), Gaps = 13/227 (6%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || || || || | ||||| ||| | | Sbjct 2017 ATGCAAATCTTCGTGAAAAC----ACGGGAAAAACAATCACCTTCGAGGTGGAGCCTTCT 1962 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || ||||| ||||||| || | || ||||| ||| Sbjct 1961 GATACCATCGAAAATGTTAAAGCTAAGATTCAGGGCA---------TCCCACCAGATCAG 1911 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| ||||||||||||| |||||| | || |||| |||||||| | || || || Sbjct 1910 CAACGTTTAATTTTTGCTGGAAAGCAATTAGAAGATGCACGTACCCTCTCTGATTACAAA 1851 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || ||||| || | || ||||| ||||| Sbjct 1850 ATTCAGAAAGAGTCAACGCTGCATCTTGTGCTTCGCCTTCGTGGTGG 1804 >seq28036 Length=10335 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||| ||||||| ||||| ||||||| || ||||||||||| || ||| | || ||| Sbjct 7825 AAGATTTAGGACAATGAGGGTGTTCCTCCGGATCAGCAGCGTCTGATCTTTTCCGGAAAG 7766 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | ||||||| ||||| || | ||||| ||| |||| ||||| ||| || ||| Sbjct 7765 CAGGTTGAGGATGGCCGTACACTCTCGGACTACAATATCCAGAAGGAGAGCACCCTGCAT 7706 Query 27610 CTAGT 27614 || || Sbjct 7705 CTCGT 7701 >seq35959 Length=4883 Score = 84.2 bits (92), Expect = 2e-11 Identities = 283/432 (66%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| ||| ||| | ||||| |||||| || ||||| | | || ||||| || Sbjct 1929 GTGGTGGATGGCTTGAAGCCGGGACAGCGTAAAGTGATTTTTACATGTTTCAAGCGCAA- 1871 Query 32038 CTGTCGAGTGACATG--AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCT 32095 || | || | | | ||||| || || || | || | ||||| ||| | | |||| Sbjct 1870 -TGACAAGAAAGAGGTTAAGGTTGCACAATTGGCTGGTTCAGTGGCTGAGAAGTCAGCCT 1812 Query 32096 ATCACCACGGCGAG--GCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGT 32153 ||||||| || ||| | ||| || | ||||||||||| || |||||||| | ||| Sbjct 1811 ATCACCATGGTGAGCAGAGTCTCTGTTCG--ACCATTGTCAATCTGGCTCAGAATTATGT 1754 Query 32154 CGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGG 32213 || ||||| | || | || ||||| ||| || || || || | ||| || Sbjct 1753 TGGCAGCAATAATATCAATCTCCTTCAGCCAAATGGTCAATTCGGCACGAGACTCAATGG 1694 Query 32214 TGGCAAGGATGCTGCGAGCTCCC-GTTACATCTTCAC--CCGTCTCGCACCTTCGACGCG 32270 |||||||||| ||| | ||||| ||||||||||||| |||||| ||| | | || Sbjct 1693 TGGCAAGGATAGTGC-ATCTCCCCGTTACATCTTCACGATGCTCTCGCCCCT--GGCTCG 1637 Query 32271 CAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCG 32330 ||||||| | ||| |||||| | | || ||||| | || ||| |||| Sbjct 1636 ACTGATTTTCCATCCGCACGACGATCCTCTCCTTCAGTACCAAAAGGACGACAATCAGGA 1577 Query 32331 GGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGG 32390 | || || || | ||| || | |||| ||| | | || || ||||| || || Sbjct 1576 CATTGAACCAGTCTGGTACCTACCCATCATTCCCATGGTACTTGTAAATGGTGCCGAGGG 1517 Query 32391 CATCGGAACGGG 32402 ||| ||||| || Sbjct 1516 CATAGGAACAGG 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569548850265120