Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18 145 5e-30 seq186 109 3e-19 seq165 95.1 8e-15 seq83690 89.7 3e-13 >seq18 Length=974545 Score = 145 bits (160), Expect = 5e-30 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | ||| || ||||||||||| || || || ||||| || ||||| || Sbjct 449664 AGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGG 449605 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || |||||||| || ||||| || | ||||||| Sbjct 449604 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCC 449545 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| |||||| ||| | | ||| || ||| | ||||| |||| ||| Sbjct 449544 TTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTG 449485 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || ||||| || || | || |||||||| |||||||| |||| Sbjct 449484 ATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTTGA 449442 >seq186 Length=148488 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | |||||| || |||||| |||||||| || || ||||| || || Sbjct 13161 AGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGA 13102 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | |||||| ||||| || || | |||||| Sbjct 13101 CCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCC 13042 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | || || | ||| || || | ||| || || | || Sbjct 13041 TTATC-CTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGT 12983 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| || || |||||||| |||||||| Sbjct 12982 GATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 12944 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || |||||| || || || || || || || || || Sbjct 13615 AGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGA 13556 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || |||||||| || ||||||||||||||||| || | |||||| Sbjct 13555 CCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCC 13496 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || || ||| ||| | || ||| | ||| || || || || || | ||| Sbjct 13495 TTATC-CTGA-ATTTGGCCTTCACGTTTCAATAGTATCAGAAGGTTCGACCTCAAGGGTA 13438 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || || ||||| ||||||||| Sbjct 13437 ATGGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCATG 13399 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||| | ||| || || ||||| || ||||| || || ||| Sbjct 14080 CCACCACGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAA 14021 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||||||||| || ||||| || ||||| || ||||| || || Sbjct 14020 AGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGA 13961 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || || || ||||| ||| | | |||||| || || ||| Sbjct 13960 ATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACT 13901 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || ||||| | ||||| || ||||| |||||| Sbjct 13900 TCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 >seq165 Length=164173 Score = 95.1 bits (104), Expect = 8e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | |||||| ||||||||||| ||||| || || || || ||||| | Sbjct 30354 AGACGCAACACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGG 30413 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || | ||| || || |||||||| || | | ||||||| || || | | ||||||| Sbjct 30414 CCATCCTTAAGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCC 30473 Query 34609 TTGTC 34613 ||||| Sbjct 30474 TTGTC 30478 >seq83690 Length=433 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||||||| |||||||||||||| || || ||||| || || Sbjct 243 AGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGG 184 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || || || || | |||||| ||||| || || | ||| ||| Sbjct 183 CCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCC 124 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 123 TTGTCCTGGATCTT 110 Score = 89.7 bits (98), Expect = 3e-13 Identities = 130/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 34528 TTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGT 34587 || ||||| ||||| || || | ||||||||||| || |||||||| || |||||||| Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 34588 TGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC 34646 ||||| || || | ||| |||||||| ||| ||| | || || | ||| ||||| Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTC-CTGAATTTTAGCCTTGACATTCTCAATGGTGTC 313 Query 34647 TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||| ||||| | || || || || ||||| | || || ||||| |||||||| Sbjct 312 AGAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314319840354458