Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7333 147 2e-30 >seq7333 Length=2231 Score = 147 bits (162), Expect = 2e-30 Identities = 283/416 (68%), Gaps = 1/416 (0%) Strand=Plus/Plus Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || |||||||| || ||||| || || || || || |||||| | |||||||| || Sbjct 1146 CGAGAGGAGGGTGATTTGGGGCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGAGCCCCC 1205 Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 ||| | | | | |||| |||||||| | ||| |||||| || | ||||| Sbjct 1206 TATGGCACATGTAAGGATAACTACGTTGGACAGGGCGTGGATCAGCTGAAGGAGGTGATT 1265 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 | | | | ||| || |||| | |||| | ||| |||| ||||| || | Sbjct 1266 CAGCGCATCCGGGAGAAGCCAAATGATCGGCGGATTATCATGAGCGCATGGAATCCTGTG 1325 Query 34565 GATCTCCCTCTGATGGCGCTCCCC-CCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA 34623 ||| | || | ||||| || ||| || || ||| |||| || || ||||| || || Sbjct 1326 GATTTACCCATAATGGCACTACCCACCCTGTCACTGCCTCGTGCAGTTTTACGTGGCCAA 1385 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 |||||| || ||||||||| | ||||||||||||| ||| ||||| || || || || || Sbjct 1386 TGGGGAACTCTCCTGCCAGATGTATCAACGATCGGCAGATATGGGCTTGGGTGTTCCATT 1445 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCC 34743 ||||||||| || ||||| || ||||| || ||||| || | | | || Sbjct 1446 CAACATTGCCAGCTACGCCCTTCTCACTCGAATCATCGCCCACATAACTGATCTCAAGCC 1505 Query 34744 TGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 |||||| | || || || |||| ||||| ||| |||| || || ||| | |||| Sbjct 1506 TGGGGATTTTGTCCACACTCTGGGAGATGCTCATGTCTATCTAAATCACGTTGAGC 1561 Score = 147 bits (162), Expect = 2e-30 Identities = 283/416 (68%), Gaps = 1/416 (0%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||| | ||| || || |||| ||| ||||| |||| || || || | |||||||| Sbjct 1561 GCTCAACGTGATTTAGATAGACATGAGCATCTCCCAGAGTGTGGACAAAATCCCCAGGCT 1502 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 | | | || ||||| || ||||| || ||||| || ||||||||||| | Sbjct 1501 TGAGATCAGTTATGTGGGCGATGATTCGAGTGAGAAGGGCGTAGCTGGCAATGTTGAATG 1442 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 | || || || ||||| ||| ||||||||||||| | ||||||||| || |||||||| | Sbjct 1441 GAACACCCAAGCCCATATCTGCCGATCGTTGATACATCTGGCAGGAGAGTTCCCCATTGG 1382 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGG-GGGGAGCGCCATCAGAGGGAGATCCTTC 6784 | ||||| || || |||| ||| || || ||| || ||||| | || | |||| Sbjct 1381 CCACGTAAAACTGCACGAGGCAGTGACAGGGTGGGTAGTGCCATTATGGGTAAATCCACA 1322 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 || ||||| |||| ||| | |||| | |||| || ||| | | | | ||| Sbjct 1321 GGATTCCATGCGCTCATGATAATCCGCCGATCATTTGGCTTCTCCCGGATGCGCTGAATC 1262 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 || | || |||||| ||| | |||||||| |||| | | | | ||| Sbjct 1261 ACCTCCTTCAGCTGATCCACGCCCTGTCCAACGTAGTTATCCTTACATGTGCCATAGGGG 1202 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 || |||||||| | |||||| || || || || || ||||| || |||||||| || Sbjct 1201 GCTCCAAAGTGACGCCACTGAAAGCCATAAACTGGCCCCAAATCACCCTCCTCTCG 1146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447663824010720