Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq83690 176 1e-38 seq186 165 2e-35 seq18 158 3e-33 seq165 98.7 2e-15 seq7442 96.9 8e-15 >seq83690 Length=433 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || |||||||| || ||||| ||||| || |||| ||| || | |||||| Sbjct 237 AGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCT 178 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || |||||||| || || || ||||| ||||| | ||||||||||||| Sbjct 177 TCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 118 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || || || || ||| ||||| || ||||| ||| Sbjct 117 TGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTC 58 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 57 TTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Score = 131 bits (144), Expect = 4e-25 Identities = 137/179 (77%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 210936 TTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGT 210995 || ||||||| ||| || | |||||||| || ||||| || || ||||| | || || Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 210996 TGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 ||||| ||||| | ||||||||||||||| || || || || || || ||||||||| Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCA 312 Query 211056 GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| |||||||| || ||| |||| || || ||||| ||||| | |||||| Sbjct 311 GAGGGCTCAACTTCGAGAGTAATGGTC-TTCCGGTAAGGGTCTTGACAAAGATCTGCAT 254 >seq186 Length=148488 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||||||||| || ||||| || |||||||| || || | || || | ||||||||| Sbjct 13834 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCC 13775 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||| || || || ||||| | || || || || || || | |||||||||||||||| Sbjct 13774 AACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGG 13715 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || ||||| || || ||||||||| ||||| |||||||| || |||||| Sbjct 13714 ATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTT 13655 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| | |||||| Sbjct 13654 CCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 141 bits (156), Expect = 2e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||| | ||||| || ||||| || |||||||| || || | | Sbjct 13396 TCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAA 13337 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| ||||| || || ||||| ||||| || || | Sbjct 13336 GGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGAT 13277 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| || |||||||| || || || || ||||||||||| |||||| || Sbjct 13276 ACCCTCCTTATCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTC 13217 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| |||||||| || || || || ||||| | |||||| Sbjct 13216 AAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCATT 13171 >seq18 Length=974545 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || ||| ||| || ||||| || ||||||| || || | ||||| || Sbjct 449655 ACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCA 449596 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||| | || || || || ||||||| ||| ||||||||||| Sbjct 449595 AGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGA 449536 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| |||||| ||||| ||||| || ||| ||| ||||| | ||||| || || Sbjct 449535 ATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTC 449476 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| |||||||| ||||| | ||||||||| Sbjct 449475 CCCGTAAGAGTCTTCACAAAGATCTGCATTTT 449444 >seq165 Length=164173 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || ||| ||| || || || || || |||| || || ||||| | Sbjct 30363 ACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGGCCATCCTTA 30422 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||| || | ||||| || |||| || ||| ||||||||||| Sbjct 30423 AGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCCTTGTCCTGA 30482 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| |||| ||||| ||||| ||| ||| || || | ||||| || || Sbjct 30483 ATCTTTGCAATCACATTTTCAATGGTTATTGAGGGTTCTACTTCCAATGTGATGGTTTTC 30542 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 |||| |||||| ||||| | |||||||| Sbjct 30543 TCCGT--AAGTCTTCACAAAGATCTGCATTT 30571 >seq7442 Length=2102 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/199 (70%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || || || |||||||| || || || ||||| | ||||| Sbjct 1809 ACGAAGGCGAAGCACAAGATGCAGCGTTGACTCTTTCTGAATTTTGTAATCAGAGAGGGT 1868 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | | ||||||| | ||||| || || || || | ||||| || || || || | Sbjct 1869 ACGTGCATCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGA---- 1924 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || |||| ||||| ||| || ||||||||||| ||||| || ||||||| Sbjct 1925 -----TGCCCTGAATCTTAGCTTTAACATTTTCGATGGTATCAGAAGGCTCCACCTCGAA 1979 Query 211073 AGTGATCGTCTTTCCCGTG 211091 ||||| || ||||||||| Sbjct 1980 GGTGATTGTTTTTCCCGTG 1998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157565459239490