Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq186 122 6e-23 seq83690 102 6e-17 seq18 89.7 3e-13 >seq186 Length=148488 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| ||||| || || |||||||||||||| || | Sbjct 13626 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCT 13685 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| ||||| | || |||||||| Sbjct 13686 GACACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 13745 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || |||||||| ||||| ||||||| | || ||| | || |||||| Sbjct 13746 CAGCGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAAC 13805 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 13806 ATCCAGAAGGAGTCAAC 13822 Score = 102 bits (112), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| || || ||||| || || ||||| |||||||| | | Sbjct 13854 ATGCAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCT 13913 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| || ||| || |||||||| | || ||||| || Sbjct 13914 GATACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 13973 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || ||||| || ||||| || |||||||| || || | || | |||| | || |||| Sbjct 13974 CAACGTTTGATTTTTGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCG--GACTACA 14031 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 14032 ACATCCAGAAGGAATCAAC 14050 >seq83690 Length=433 Score = 102 bits (112), Expect = 6e-17 Identities = 133/180 (74%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || |||| | | || |||||||||||||| || | Sbjct 254 ATGCAGATCTTTGTCAAGACCCTTACCGGAAGACC-ATTACTCTCGAAGTTGAGCCCTCT 312 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||||| ||||| ||||| | || ||||| || Sbjct 313 GACACCATTGAGAATGTCAAGGC-TAAAATTCAGGACAAGGAAGGAATCCCTCCAGACCA 371 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || |||||||| || ||||| ||||| | || ||| | |||||||| Sbjct 372 GCAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGATGGTCGTACTCTTTCGGATTACAA 431 >seq18 Length=974545 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || || || ||||| ||||| ||||| | || || || || Sbjct 449444 AAAATGCAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAACCC 449503 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | ||| ||| ||| ||||| || || | || || ||| Sbjct 449504 TCAGATACCATTGAAAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGAT 449563 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATT 23785 || |||||||| || |||||||| || || || || || | || |||| | | |||| Sbjct 449564 CAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCG--GATT 449621 Query 23786 ACAACATACAAAAAGAG 23802 |||| || || || ||| Sbjct 449622 ACAATATCCAGAAGGAG 449638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337569531147608