Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq186 129 1e-24 seq83690 127 5e-24 seq9899 122 2e-22 seq1322 86.0 1e-11 >seq186 Length=148488 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || || |||| ||||| |||| ||| || | ||||| || |||||| Sbjct 13374 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCGAGCTGC 13315 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || || ||||| ||||| || || ||||| ||||| ||||||||||| Sbjct 13314 TTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGGATCTTA 13255 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || |||||||| || | ||| || || | ||||| ||||| || || Sbjct 13254 GCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTTCCGGTA 13195 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||||| | || | ||||||| Sbjct 13194 AGGGTTTTGACAAAAATTTGCATT 13171 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||||||| || || || || || |||| ||||| || | | ||| | |||||||| Sbjct 13834 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCC 13775 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | ||| ||||| || ||||| | || || || || || || || ||||||||||| ||| Sbjct 13774 AACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGG 13715 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| || || || ||||| |||| || || || | || || ||||| Sbjct 13714 ATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTT 13655 Query 225685 CCCGT 225689 || || Sbjct 13654 CCAGT 13650 >seq83690 Length=433 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| |||||||||||||| ||||| | ||||| || | | ||| | |||||| Sbjct 237 AGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCT 178 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||||||||| || || || ||||| || || || ||||||||||| Sbjct 177 TCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 118 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | ||| || || | ||||| ||| Sbjct 117 TGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTC 58 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 57 TTGCCAGT 50 >seq9899 Length=970 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || || ||||| ||||| || ||||| ||| | |||||| Sbjct 845 CAAATTTATAATGTAATTGTAACAGCTCATGCATTTGTAATAATTTTTTTTATAGTTATG 786 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || || || ||| | || ||| |||| | ||||| ||||| Sbjct 785 CCTATTATAATTGGGGGATTTGGTAACTGACTTGTCCCTCTAATATTAGGTGCCCCTGAC 726 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || |||||||| | | || ||||||||||||||| || |||| ||||| ||| |||| Sbjct 725 ATAGCTTTTCCTCGAATAAATAATATAAGTTTTTGACTATTACCCCCTTCATTAACTCTA 666 >seq1322 Length=42274 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || ||||| ||||||||||| |||||||| ||||| || || || |||||||| Sbjct 11308 GAAGATCTGCCCATCGGTAATAGAGATGACATTTGTTGGGATGTAGGCTGACACATCACC 11367 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 || || || || | |||||| | ||| || || || ||||| || Sbjct 11368 AGCCTGGGTCTCAATAACAGGCAGGGCAGTGAGAGAGCCACCGCC 11412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190898972857244