Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq26202 183 3e-41 seq2745 165 7e-36 >seq26202 Length=13276 Score = 183 bits (202), Expect = 3e-41 Identities = 507/769 (66%), Gaps = 10/769 (1%) Strand=Plus/Minus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 ||||| | || || ||||||||||| || |||||| |||||| | ||| || || || Sbjct 1634 ACAAGTAGCCGATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCC 1575 Query 4431 ATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGT 4489 | | ||| ||| || || || | || | || || ||||| || || || ||||| Sbjct 1574 AGCATATC-CACTGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCGCG 1516 Query 4490 GATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACA 4549 ||| || || | || || || || || || | || | | |||| ||||| Sbjct 1515 GATGATTTCGATGATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACA 1456 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 ||||| ||||| ||||||||||| || | ||||| ||||| || || || | ||| Sbjct 1455 GGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTGAGTCC 1396 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 |||||| | || | ||| ||||| || || | || || || |||||| || Sbjct 1395 GGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAGAAAAT 1336 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT--TGTCTTT- 4726 ||| || || || ||||| || | | || ||| || | | |||| || || Sbjct 1335 GCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAA---GTTAGCTTCCTGACTGGC 1279 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| | | ||||| | || || ||||| || || || | || | || || || Sbjct 1278 AATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATT 1219 Query 4787 AAATAATTTACTTTTT-TCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 || | ||| ||| || || || | || || ||||| ||||| || || |||| Sbjct 1218 GAAGAGGA-ACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCAATTAGCAGACTGTACA 1160 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 | ||| || | ||| || || ||||||||||| || || ||| ||||||| ||||||| Sbjct 1159 TCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCTGTTA 1100 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||| || || | || || | || || | || || || || || || || || | Sbjct 1099 TTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGG 1040 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 |||| || ||||| || || || || || | | || | ||| ||| ||||||| Sbjct 1039 CAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTCCAGT 980 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | | ||| | | ||| ||||| || || ||||| || |||||||| |||| || Sbjct 979 GATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGACGCTTCAGCTTGTT 920 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 ||||||| ||| || ||| | |||||||| |||| || || ||||| Sbjct 919 TGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAATCT 871 >seq2745 Length=20976 Score = 165 bits (182), Expect = 7e-36 Identities = 503/769 (65%), Gaps = 10/769 (1%) Strand=Plus/Minus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 ||||| | || || ||||||||||| || |||||| |||||| | ||| || || || Sbjct 4358 ACAAGTAGACGATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCC 4299 Query 4431 ATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGT 4489 | | ||| ||| || || || | || | || || ||||| || || || ||||| Sbjct 4298 AGCATATC-CACTGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCACG 4240 Query 4490 GATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACA 4549 ||| || || | || || || || || || | || | | |||| ||||| Sbjct 4239 GATGATTTCGATGATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACA 4180 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 ||||| ||||| ||||| ||||| || | ||||| ||||| || || || | ||| Sbjct 4179 GGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCGTTTGAGAATGTGAGTCC 4120 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 |||||| | || | ||| ||||| || || | || || || ||||| || Sbjct 4119 GGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTGAAGAAAAT 4060 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT--TGTCTTT- 4726 ||| || || || ||||| || | | || ||| || | | |||| || || Sbjct 4059 GCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAA---GTTAGCTTCCTGACTGGC 4003 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| | | ||||| | || || ||||| || || || | || | || || || Sbjct 4002 AATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATT 3943 Query 4787 AAATAATTTACTTTTT-TCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 || | ||| ||| || || || | || || ||||| || || || || |||| Sbjct 3942 GAACAGGA-ACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAATCAGCAGACTGTACA 3884 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 | ||| || | ||| || || ||||||||||| || || ||| ||||||| || |||| Sbjct 3883 TCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCGGTTA 3824 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||| || || | || || | || || | || || || || || || || || | Sbjct 3823 TTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGG 3764 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 | || || ||||| || || || || || | | || | ||| ||| ||||||| Sbjct 3763 CGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTCCAGT 3704 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | | |||| | || ||| || || || || ||||| || |||||||| |||| || Sbjct 3703 GATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGACGCTTCAGCTTGTT 3644 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 ||||||| ||| || ||| | |||||||| |||| || || ||||| Sbjct 3643 TGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAATCT 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426493606243058