Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7333 149 5e-31 >seq7333 Length=2231 Score = 149 bits (164), Expect = 5e-31 Identities = 393/591 (66%), Gaps = 8/591 (1%) Strand=Plus/Minus Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198 ||||| || || ||||||| || ||||| ||||| |||||||| ||||||||||| || Sbjct 1568 TTCAGAGGCTCAACGTGATTTAGATAGACATGAGCATCTCCCAGAGTGTGGACAAAATCC 1509 Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258 || || | || | || | ||| || || || ||||| || | ||||||||| ||| Sbjct 1508 CCAGGCTTGAGATCAGTTATGTGGGCGATGATTCGAGTGAGAAGGGCGTAGCTGGCAATG 1449 Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 27318 || || || || || | ||||| || |||| | || || | ||| || ||||| || Sbjct 1448 TTGAATGGAACACCCAAGCCCATATCTGCCGATCGTTGATACATCTGGCAGGAGAGTTCC 1389 Query 27319 CCATCGCTTACGTAAAACTGACATATGGC-GTGGCACGG-AGGAAGAGCCATGAGGCCCA 27376 |||| | ||||||||||| || ||| ||| || || || || ||||| | | | Sbjct 1388 CCATTGGCCACGTAAAACTG-CACGAGGCAGTGACAGGGTGGGTAGTGCCATTATGGGTA 1330 Query 27377 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGA 27436 | || || ||||| |||| || ||| || |||| || | ||| || | || |||| Sbjct 1329 AATCCACAGGATTCCATGCGCTCATGATAATCCGCCGATCATTTGGCTTCTCCCGGATGC 1270 Query 27437 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCT--CATGTC 27494 | | | | | | |||||||||||| ||| || ||||| || ||| ||||| Sbjct 1269 GCTGAATCACCTCCTTCAGCTGATCCACGCCCTGTCCAACGTAGT-TATCCTTACATGTG 1211 Query 27495 CGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTC 27554 | || ||||| || || | ||| || || || || || || |||| || ||||| Sbjct 1210 C-CATAGGGGGCTCCAAAGTGACGCCACTGAAAGCCATAAACTGGCCCCAAATCACCCTC 1152 Query 27555 TTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 27614 || | | | ||| ||| | |||| || || || | || ||| | | |||||| Sbjct 1151 CTCTCGCTCCGTGAATCCCATTGAATCCAGGAACTCCCTTGTACTGTTCCCATTCCAGAT 1092 Query 27615 CTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 27674 | | ||||| | || || | || || || || |||| |||||| | || Sbjct 1091 CCCAATGTTCTTCTGCTGCAATTCCTTTGCGTCAGTTGAACCCCTGATGAACCAGATCAA 1032 Query 27675 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 27724 ||||| | || | |||||| || |||||||| || ||||| ||||| Sbjct 1031 TTCCTCAGCTACACCTCGCCAAAACACTCTCTTGGTGGTCAGGAGCGGGAA 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369026123103206