Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4578 264 2e-65 seq26202 246 4e-60 seq2745 223 5e-53 seq2952 98.7 1e-15 >seq4578 Length=10518 Score = 264 bits (292), Expect = 2e-65 Identities = 815/1237 (66%), Gaps = 43/1237 (3%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||| || || | ||||| || |||| || || || || ||||| | ||| Sbjct 6888 TGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAGGAT 6947 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || || | ||| || || || ||||| |||||||| || || |||| || | Sbjct 6948 TCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAACGAA 7007 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || || | |||||| ||||| | |||| | | ||||| ||| | ||| | Sbjct 7008 TTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAATCCGTT 7067 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATAT 77366 ||| |||| | ||||| || || || || || || | |||| ||| Sbjct 7068 GGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTGCGTAT 7127 Query 77367 GTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAA 77426 || || || ||||| | ||||| | ||| ||||| || ||||| || ||||| || Sbjct 7128 GTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGTAGTAG 7187 Query 77427 ATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGGATAATG 77485 || || ||||| || | || |||||| | |||| ||||| || ||| | || | | Sbjct 7188 ATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCTTCTTCGCTGTCATAGGGCAGACG 7246 Query 77486 TAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 77545 | | ||| || ||||| || | |||||||| ||||| ||||| || || || ||| | Sbjct 7247 CATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCCTCAT 7306 Query 77546 ATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 |||||| | ||| || ||||| | ||||| || || ||||| || | ||| || | ||| Sbjct 7307 ATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATT 7366 Query 77606 TC---TAACAA-CTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC-CAT 77658 | |||||| || | | ||| | || ||||| |||||| | |||| || Sbjct 7367 GCGCGTAACAATCTTCGT----CACTGCTTTGAGTTTCTCAAAATCGTACGTCTTATCAG 7422 Query 77659 CTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGT 77718 | | || ||||| || | ||| |||||||| ||||| || || || | ||||| | | Sbjct 7423 CCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCAT---CCT 7479 Query 77719 TGGC---ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 ||| ||||| || || || || || | ||| ||||| || || || | ||| | Sbjct 7480 TGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCT 7539 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 | || |||||||| | ||||| | || || || | || |||| ||||| ||||| | Sbjct 7540 GCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCA 7599 Query 77836 TCTGTGATTCG--ATAATAGATTTCCAGACGACTCTAGCTT---TTATCATAGATTTGTA 77890 || ||| || || || | ||||| |||| || || || | ||| | Sbjct 7600 -CT-TGACTCTGAATTATGGCAAACCAGAGATCTCTCGCAGGAATTCTCCT-GATATACC 7656 Query 77891 TCGCCTCTCTCTTTCATA-TTGA-GTATATAGCCGTTCAAATTCATCTCCCCAAACATCA 77948 | | || ||| |||| || | ||| | | | || || ||| || ||||| |||| Sbjct 7657 TACCTTCCTTCT--CATACTTCATGTACA-ATTCATTGAATTTC-TCACCCCAGCAATCA 7712 Query 77949 TCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGT 78008 |||||| || | | ||| || |||||||| ||| || |||||||| |||| Sbjct 7713 AACAATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTC 7772 Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC-TATGTTCTTC 78067 | |||||| ||||| || ||||| |||||| || ||||| | | || | |||| | Sbjct 7773 TGCATAAACAGATCCGGGATCCACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTCTCC 7832 Query 78068 ATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 78127 || || |||||||| || ||||| | |||||| | || ||| ||||| || || || Sbjct 7833 -TTGCCCGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAG 7891 Query 78128 ATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTT 78187 || || || | | || || || || || || |||||||| | || | ||| || | Sbjct 7892 GTAGATAGCAAAGGCACCGGGACGCTTGTTCCCACCCTGATCAACGTAGCAGGCTGTTGT 7951 Query 78188 ATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 || || || | | |||||| | || || || || || ||||| || || | ||||| Sbjct 7952 GTTGTAGACACGAAGCATTGGGACAAGGCCATTGGAGGTGCCATTGGTGCCGGCAATATG 8011 Query 78248 ACTTCCACTTGCGCGAATATTACTAATGGATATCC----CTATTCCTCCTGCCATCTTAG 78303 ||| || | || ||||| | || |||| | | |||||||| || ||| | Sbjct 8012 ACTGCCCCGAGCACGAATGC----AGTGCATATTCACGCCAATTCCTCCGGCAGCCTTTG 8067 Query 78304 ATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 | || ||||| || | |||| ||||||||||| || Sbjct 8068 AGATCAGAGCACATTGCTTCAGGGTATCGTAGATTCC 8104 >seq26202 Length=13276 Score = 246 bits (272), Expect = 4e-60 Identities = 495/731 (68%), Gaps = 15/731 (2%) Strand=Plus/Minus Query 48012 CAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTG 48071 |||||||| || | | | ||||| || || || || || || || ||||| || || Sbjct 1586 CAATTCATGCCCAGCATATCCACTGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTC 1527 Query 48072 ACAGCATCCACTATTAT--CGATGTTACCGTTTCCTCACTTGGTGGA----TACAACAAA 48125 ||||| || || || ||||| | | ||| ||||| || | || || | Sbjct 1526 ACAGCTTCGCGGATGATTTCGATGATGCG-----CTC-CTTGGAGGGCTTCTGCACCAGA 1473 Query 48126 TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCG 48185 || || ||||| ||||| ||||| ||||| || | ||||||||| | | || | ||| Sbjct 1472 TGCTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTCG 1413 Query 48186 TTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA 48245 || || |||||||| |||||||| | |||||| ||||||||| || |||| ||||| Sbjct 1412 TTCGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAG 1353 Query 48246 GATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG 48305 ||| |||||| ||||| || || || ||||| || | | | || || | | Sbjct 1352 CTTCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTA 1293 Query 48306 GCTTCGT---TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 ||||| | || |||||| | | |||||||| ||||||||||| ||||| |||| Sbjct 1292 GCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGC 1233 Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATT 48422 || || || ||||| ||||| || | ||| || | ||| | ||| || || ||| Sbjct 1232 GTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCAATT 1173 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 | ||||| ||||| || ||| | ||| || || || |||||||| || || || || Sbjct 1172 AGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAAT 1113 Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542 || || ||||| || || |||||| || || || || ||| ||||||||| || || Sbjct 1112 CTAGCCTCTGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATC 1053 Query 48543 CCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTC 48602 ||||| ||| ||||| || || || || || ||| || | | || || Sbjct 1052 CCATCGGAAGCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTC 993 Query 48603 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGAT 48662 ||| |||||||| || ||||| || | ||| ||||| || | ||||| || || Sbjct 992 AGTGCATTCCAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGAC 933 Query 48663 GCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAAT 48722 || || |||| ||| ||||| | ||| || ||| ||| || || || || | || ||| Sbjct 932 GCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAAT 873 Query 48723 CTATTTGGATT 48733 || | ||||| Sbjct 872 CTCCTGGGATT 862 >seq2745 Length=20976 Score = 223 bits (246), Expect = 5e-53 Identities = 490/731 (67%), Gaps = 15/731 (2%) Strand=Plus/Minus Query 48012 CAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTG 48071 |||||||| || | | | ||||| || || || || || || || ||||| || || Sbjct 4310 CAATTCATGCCCAGCATATCCACTGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTC 4251 Query 48072 ACAGCATCCACTATTAT--CGATGTTACCGTTTCCTCACTTGGTGGA----TACAACAAA 48125 ||||| || || || ||||| | | ||| ||||| || | || || | Sbjct 4250 ACAGCTTCACGGATGATTTCGATGATGCG-----CTC-CTTGGAGGGCTTCTGCACCAGA 4197 Query 48126 TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCG 48185 || || ||||| ||||| ||||| ||||| || | |||||||| | | || | ||| Sbjct 4196 TGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCG 4137 Query 48186 TTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA 48245 || || |||||||| |||||||| | |||||| ||||||||| || |||| ||||| Sbjct 4136 TTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAG 4077 Query 48246 GATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG 48305 ||| ||||| ||||| || || || ||||| || | | | || || | | Sbjct 4076 CTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTTA 4017 Query 48306 GCTTCGT---TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 ||||| | || |||||| | | |||||||| ||||||||||| ||||| |||| Sbjct 4016 GCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAGC 3957 Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATT 48422 || || || ||||| || || || | ||| || | ||| | ||| || || || Sbjct 3956 GTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAATC 3897 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 | ||||| ||||| || ||| | ||| || || || |||||||| || || || || Sbjct 3896 AGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAAT 3837 Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542 || || || || || || |||||| || || || || ||| ||||||||| || || Sbjct 3836 CTAGCCTCGGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAATC 3777 Query 48543 CCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTC 48602 ||||| ||| || || || || || || || ||| || | | || || Sbjct 3776 CCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTTC 3717 Query 48603 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGAT 48662 ||| |||||||| || |||||| |||| ||| || || || | ||||| || || Sbjct 3716 AGTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGAC 3657 Query 48663 GCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAAT 48722 || || |||| ||| ||||| | ||| || ||| ||| || || || || | || ||| Sbjct 3656 GCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAAT 3597 Query 48723 CTATTTGGATT 48733 || | ||||| Sbjct 3596 CTCCTGGGATT 3586 >seq2952 Length=20052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 || |||| || || ||||||| | | || ||||| || || || |||||||| || Sbjct 6241 TTGTCCACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCCG 6300 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| || ||| | |||| ||||||| || ||| || |||||| ||| | || Sbjct 6301 GTTTTCAGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGGT 6360 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || || | | ||| || | |||||||| || || || || ||||||| ||||||||| Sbjct 6361 TCTGCCACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCC 6420 Query 76953 ATTTTTATAATGGTCTT 76969 || | || |||||||| Sbjct 6421 ATCTCGATCATGGTCTT 6437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693741191384640