Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4578 307 2e-78 seq2952 107 3e-18 >seq4578 Length=10518 Score = 307 bits (340), Expect = 2e-78 Identities = 816/1229 (66%), Gaps = 27/1229 (2%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| || || | ||||| || |||| || || || || ||||| | ||| Sbjct 6888 TGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAGGAT 6947 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || || | ||| || || |||||||| || ||||| || || |||| || | Sbjct 6948 TCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAACGAA 7007 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || || | |||||| ||||| | |||| | | ||||| ||| | ||| | | Sbjct 7008 TTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAATCCGTT 7067 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 ||| |||| | ||||| || || || || ||||| | |||| ||| Sbjct 7068 GGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTGCGTAT 7127 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 || ||||| | || ||| ||||| | ||||||||| ||||| || |||||||| || Sbjct 7128 GTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGTAGTAG 7187 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGATAATG 76080 || || ||||| || | || ||| || | |||| ||||| || ||| | || | | Sbjct 7188 ATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCTTCTTCGCTGTCATAGGGCAGACG 7246 Query 76081 TAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 | | ||| || ||||| || || |||||||| ||||| ||||| || || || ||| | Sbjct 7247 CATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCCTCAT 7306 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 |||||| | || || ||||| | || || || || || || || | ||| || | ||| Sbjct 7307 ATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATT 7366 Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---TTTCCATCTAT 76257 | ||| | || ||| | || ||||| |||||| | || || | | Sbjct 7367 GCGCGTAACAATCTTCGTCACTGCTTTGAGTTTCTCAAAATCGTACGTCTTATCAGCCTT 7426 Query 76258 CACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGC 76317 || |||||||| ||||| |||||||| ||||| || || || | ||||| | |||| Sbjct 7427 TACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCAT---CCTTGGA 7483 Query 76318 ---ATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTG 76374 ||||| || || || ||||| | ||| ||||| || || |||| ||| || || Sbjct 7484 CGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCTGCTG 7543 Query 76375 GTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTG 76434 |||||||| |||| || | || || || | | |||| || |||||||| | || Sbjct 7544 ATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCA-CT- 7601 Query 76435 TGATTCG--ATAATAGATTTCCAGACGACTCTAGCTTTTATTATA--GATTTGTATCGCT 76490 ||| || || || | ||||| |||| || ||| | ||| | | || Sbjct 7602 TGACTCTGAATTATGGCAAACCAGAGATCTCTCGCAGGAATTCTCCTGATATACCTACCT 7661 Query 76491 TCTCTCTTTCATATTGTGTATATAAC-CGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 || ||| |||| | | || || | || || ||| || ||||| |||| ||| Sbjct 7662 TCCTTCT--CATACTTCATGTACAATTCATTGAATTTC-TCACCCCAGCAATCAAACAAT 7718 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || |||| | ||||||||||||||| ||| || |||||||| || | | |||| Sbjct 7719 CCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCATA 7778 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC-TACGTTCTTCATTTCC 76668 || ||||| || ||||| |||||| || ||||| | | || | | ||| || || || Sbjct 7779 AACAGATCCGGGATCCACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTC-TCCTTGCC 7837 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 |||||||| || ||||| | ||||| | || ||| ||||| || || || || || Sbjct 7838 CGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAGGTAGAT 7897 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || | |||| || || || || || |||||||| | || | ||| || | || || Sbjct 7898 AGCAAAGGCACCGGGACGCTTGTTCCCACCCTGATCAACGTAGCAGGCTGTTGTGTTGTA 7957 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 || | | |||||| | || ||| || || || ||||| || || | ||||| ||| || Sbjct 7958 GACACGAAGCATTGGGACAAGGCCATTGGAGGTGCCATTGGTGCCGGCAATATGACTGCC 8017 Query 76849 ACATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 | |||||||| | | | ||| | ||| |||||||| || || ||||| ||| Sbjct 8018 CCGAGCACGAATGCAGTGC--ATATTCACGCCAATTCCTCCGGCAGCCTTTGAGATCAGA 8075 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCC 76935 ||||| | |||| || || ||||| || Sbjct 8076 GCACATTGCTTCAGGGTATCGTAGATTCC 8104 Score = 244 bits (270), Expect = 2e-59 Identities = 701/1060 (66%), Gaps = 31/1060 (3%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| || || | ||||| || |||| || || || || ||||| | ||| Sbjct 3561 TGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAAGGAT 3620 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || || | ||| || || |||||||| || ||||| || || |||| || | Sbjct 3621 TCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAACGAA 3680 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || || | ||||||| ||||| | ||||| | | ||||| ||| | ||| | | Sbjct 3681 TTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAATCCGTT 3740 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 ||| ||||| | ||||| || || || || ||||| | |||| || Sbjct 3741 GGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTGCGTAC 3800 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 || ||||| | || ||| ||||| | ||||||||| ||||| || ||||| || || Sbjct 3801 GTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAGTAG 3860 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGATAATG 76080 || || ||||| || | || ||| || | |||| || || |||||| | || | | Sbjct 3861 ATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCCTCTTCGCTATCATAGGGCAGACG 3919 Query 76081 TAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 | | ||| || ||||| ||||| |||||||| ||||| ||||| || || |||||| | Sbjct 3920 CATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCTCAT 3979 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 |||||| | || || ||||| | || || || || || || || | ||| || | ||| Sbjct 3980 ATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCAAATT 4039 Query 76201 TC---TGACAA-CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---TTTCCAT 76253 | | |||| || | ||| | | || ||||| ||| || | || || Sbjct 4040 GCGCGTAACAATCTTCGTTA----CTGCTTTGAGTTTCTCAAAGTCGTACGTCTTATCAG 4095 Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCAT 76313 | | || |||||||| ||||| |||||||| ||||| || || || | ||||| | | Sbjct 4096 CCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCAT---CCT 4152 Query 76314 TGGC---ATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 ||| ||||| || || || ||||| | ||| ||||| || || |||| ||| | Sbjct 4153 TGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCT 4212 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | || || ||||| |||| || | || || || | | |||| || |||||||| | Sbjct 4213 GCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCA 4272 Query 76431 TCTGTGATTCG--ATAATAGATTTCCAGACGACTCTAGCTTTTATTATA--GATTTGTAT 76486 || ||| || || || | ||||| | || || ||| | ||| | | Sbjct 4273 -CT-TGACTCTGAATTATGGCAAACCAGAGATCCCTCGCAGGAATTCTCCTGATATACCT 4330 Query 76487 CGCTTCTCTCTTTCATATTGTGTATATAAC-CGTTCAAATTCATCTCCCCAAACATCATC 76545 |||| ||| |||| | | || || | || || ||| || ||||| |||| Sbjct 4331 ACCTTCCTTCT--CATACTTCATGTACAATTCATTGAACTTC-TCACCCCAGCAATCAAA 4387 Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 || || |||| | ||||||||||||||| ||| || |||||||| || | | Sbjct 4388 TAATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTG 4447 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC-TACGTTCTTCAT 76664 |||||| ||||| || ||||| |||||| || ||||| | | || | | ||| || | Sbjct 4448 CATAAACAGATCCGGGATCCACAGAGCATAGAACAGATCCCTTGCTCGTGCCTTC-TCCT 4506 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || || ||||| || ||||| | ||||| | ||| ||| ||||| || || || | Sbjct 4507 TGCCCGTGTTCTTCTTGAGATCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCCAGGT 4566 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 | || || | |||| || || || || || || ||||| Sbjct 4567 AGATAGCAAAGGCACCGGGACGCTTGTTCCCACCTTGATC 4606 >seq2952 Length=20052 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || |||| ||||| ||||| | | || |||||||| || || || |||||||| || Sbjct 6241 TTGTCCACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCCG 6300 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| || ||| | |||| ||||||| || ||| || |||||| ||| | || Sbjct 6301 GTTTTCAGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGGT 6360 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || || | | ||| || | |||||||| || || || || ||||||| ||||||||| Sbjct 6361 TCTGCCACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCC 6420 Query 75548 ATTTTTATAATGGTCTT 75564 || | || |||||||| Sbjct 6421 ATCTCGATCATGGTCTT 6437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711982400872320