Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq83690 127 5e-24 seq186 125 2e-23 seq18 105 2e-17 >seq83690 Length=433 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||||||||| ||||| || || ||||| |||||||| || | | ||| | Sbjct 244 GAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACG 185 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| | ||||| || |||||||| || | ||||||||| | | ||||||| Sbjct 184 GCCATCTTCCAATTGCTTT--CCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCT 127 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| |||| | | || ||| || || ||||| Sbjct 126 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGG 67 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| || |||| |||||| Sbjct 66 GTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Score = 111 bits (122), Expect = 4e-19 Identities = 135/181 (75%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 151926 TTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCT 151983 |||||||| | | ||| | |||||||| || ||||| ||||| ||||| | | || Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTT--CCGGCAAAGATCAAACGCT 374 Query 151984 GCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT 152043 ||||||| | | |||||||||||| || |||||||| |||||| |||| | | ||| Sbjct 373 GCTGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGT 314 Query 152044 CTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 | || ||| ||||| |||||||| || || || || || ||||| || |||| ||||| Sbjct 313 CAGAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCA 255 Query 152104 T 152104 | Sbjct 254 T 254 >seq186 Length=148488 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || ||||| || ||||||||||| || | | ||| | |||||||| Sbjct 13834 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCC 13775 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||||||||| ||||| | | |||||| || | | |||||||||||| || || Sbjct 13774 AACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGG 13715 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| |||| | |||| || ||| ||||| |||||||| || || Sbjct 13714 ATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTT 13655 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || |||| |||||| Sbjct 13654 CCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 102 bits (112), Expect = 2e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | |||||| |||||||| || ||||||||||| |||| || || | ||||| || Sbjct 13381 GACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTC 13322 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || || ||||| || || | |||||||| | | ||| || ||||| ||||| Sbjct 13321 GAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTG 13262 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| |||| | | |||| || || |||||||| || || || || Sbjct 13261 GATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTT 13202 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || | |||||| Sbjct 13201 TCCGGTAAGGGTTTTGACAAAAATTTGCATT 13171 Score = 102 bits (112), Expect = 2e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||||||||| || |||||||| || ||||| ||||| || | | || | Sbjct 13616 GAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACG 13557 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||| ||||| | | ||| ||||||| | ||| || Sbjct 13556 ACCATCTTCAAGTTGCTTT--CCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCC 13499 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || |||| ||| || || || || | | || ||| || || ||||| Sbjct 13498 TCCTTATCCTGAA-TTTGGCCTTCAC-GTTTCAATAGTATCAGAAGGTTCGACCTCAAGG 13441 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || ||||| || |||| |||||| Sbjct 13440 GTAATGGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 13400 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || || || || ||||||||||| || | | || | ||||| Sbjct 14065 AGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCC 14006 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || || || | | |||||||| | | |||||||| || || Sbjct 14005 TCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATCC 13946 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||||| | || | | || || || ||||| |||||||| || Sbjct 13945 TGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGTC 13886 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || ||||| | ||||| Sbjct 13885 TTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 >seq18 Length=974545 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| || || ||| || ||||| |||||||| | | || | ||||| || Sbjct 449655 ACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCA 449596 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || ||||| ||||| ||||| | | |||||| |||| | ||||| ||||| || | Sbjct 449595 AGCTGCTTT--CCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCT 449538 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 |||| ||| ||| ||| | || | | | ||||| || || || | || || |||| Sbjct 449537 GAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTT 449478 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| ||||||||||| |||| ||||||||| Sbjct 449477 TCCCCGTAAGAGTCTTCACAAAGATCTGCATTTT 449444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152241556096246